Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG723_RS16790 Genome accession   NZ_CP108439
Coordinates   3634116..3635093 (-) Length   325 a.a.
NCBI ID   WP_327283863.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01278     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3629116..3640093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG723_RS16770 (OG723_16790) pfkB 3629680..3630630 (-) 951 WP_327283859.1 1-phosphofructokinase -
  OG723_RS16775 (OG723_16795) - 3630627..3631385 (-) 759 WP_327283860.1 DeoR/GlpR family DNA-binding transcription regulator -
  OG723_RS16780 (OG723_16800) - 3631529..3633025 (-) 1497 WP_329313747.1 MFS transporter -
  OG723_RS16785 (OG723_16805) - 3633090..3634046 (+) 957 WP_329313750.1 YafY family protein -
  OG723_RS16790 (OG723_16810) rpoS 3634116..3635093 (-) 978 WP_327283863.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG723_RS16795 (OG723_16815) - 3635557..3637098 (-) 1542 WP_327283864.1 MFS transporter -
  OG723_RS16800 (OG723_16820) - 3637192..3637896 (-) 705 WP_327283865.1 TetR/AcrR family transcriptional regulator -
  OG723_RS16805 (OG723_16825) - 3638141..3639418 (+) 1278 WP_328763022.1 M6 family metalloprotease domain-containing protein -
  OG723_RS16810 (OG723_16830) - 3639466..3639945 (+) 480 WP_327283867.1 RidA family protein -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 36553.23 Da        Isoelectric Point: 4.8419

>NTDB_id=660666 OG723_RS16790 WP_327283863.1 3634116..3635093(-) (rpoS) [Streptomyces sp. NBC_01278]
MATRAVARRQSRGSARAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVYAQQILDGETECEGETPAREELE
ALAAEGERAKEIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQ
SRTIRLPVHLVEELGRIRRIQREFNRENGRDPDHAEIAAELDSTEKRVGDVLDWARDPVSLNMSVDDEGETQFGDLLEDT
SAVSPEQSVLSLLRSEELEDLLGKLDQRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMARDTG
FDAVA

Nucleotide


Download         Length: 978 bp        

>NTDB_id=660666 OG723_RS16790 WP_327283863.1 3634116..3635093(-) (rpoS) [Streptomyces sp. NBC_01278]
ATGGCAACCCGCGCCGTCGCCCGTCGTCAGTCCAGGGGCAGCGCCCGCGCTGTGGGCGGGGAGATCGCAGACCGCGACCT
GGTGGGCATGTACCTGGACGAGATCGCGCGTACCCCGCTGCTCGACGCGGCCAAGGAAGTGGAGCTCTCACAGATCATCG
AGGCGGGCGTGTACGCCCAGCAGATCCTCGACGGTGAGACGGAGTGCGAGGGCGAGACGCCGGCGCGCGAGGAGCTGGAA
GCCCTGGCCGCGGAAGGGGAGCGCGCCAAGGAGATCTTCATCCGCTCCAACCTCCGCCTGGTCGTGGCCGTCGCCCGCCG
CTACCCGCGCAGCGGCCTGCCCCTGCTCGACCTGATCCAGGAGGGCAATGCCGGCCTGGTGCGCGCCGTCGAGAAGTTCG
ACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCCACGTGGTGGATCCGCCAGGCCATCACCCGCTCCATCGCCGACCAG
TCCCGCACCATCCGCCTCCCCGTCCACCTCGTCGAGGAACTCGGCCGCATCCGCCGCATCCAGCGCGAGTTCAACCGCGA
GAACGGCCGGGACCCGGACCACGCGGAGATCGCCGCCGAGCTGGACTCGACGGAGAAGCGCGTGGGCGACGTACTGGACT
GGGCCCGCGACCCGGTCAGCCTGAACATGTCCGTGGACGACGAGGGCGAGACCCAGTTCGGCGACCTCCTCGAAGACACC
TCCGCGGTCTCCCCGGAGCAGTCCGTCCTGTCCCTGCTGCGCAGCGAGGAGCTGGAGGACCTGCTGGGCAAGCTCGACCA
GCGCACGGCCTCGATCATCAAGATGCGGTACGGCATCGAAGACGGCCGCGAGCGGACCCTGACGGAGGTCGGCAAGCAGC
ACGGGCTCACCCGTGAGCGGATCCGCCAGATCGAGAAGCACGCCCTTCTGGAACTGAAGCGCATGGCCCGCGACACCGGC
TTCGACGCAGTGGCCTGA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(261-313)

Sigma-70 region 3 (Sigma70_r3)

(172-248)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(26-59)

Sigma-70 region 2 (Sigma70_r2)

(93-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39

92.308

0.36