Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   MLD56_RS12215 Genome accession   NZ_CP092831
Coordinates   2734295..2736145 (+) Length   616 a.a.
NCBI ID   WP_029518458.1    Uniprot ID   -
Organism   Paenibacillus peoriae strain ZBSF16     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2729295..2741145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MLD56_RS12200 (MLD56_12200) - 2730458..2731480 (+) 1023 WP_029518461.1 NADH:flavin oxidoreductase/NADH oxidase -
  MLD56_RS12205 (MLD56_12205) - 2732055..2732465 (+) 411 WP_029518460.1 MarR family transcriptional regulator -
  MLD56_RS12210 (MLD56_12210) rcrP 2732539..2734302 (+) 1764 WP_039275165.1 ABC transporter ATP-binding protein Regulator
  MLD56_RS12215 (MLD56_12215) rcrQ 2734295..2736145 (+) 1851 WP_029518458.1 ABC transporter ATP-binding protein Regulator
  MLD56_RS12220 (MLD56_12220) - 2736267..2736575 (+) 309 WP_029518457.1 hypothetical protein -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 67824.25 Da        Isoelectric Point: 5.8944

>NTDB_id=660664 MLD56_RS12215 WP_029518458.1 2734295..2736145(+) (rcrQ) [Paenibacillus peoriae strain ZBSF16]
MDKNEHTVDSQQMKMNQPGPMGKGPAGGRGGGEKANNFKKTISQLASYSKAYVPMIILAMVLALVGSTLNVIGPDKLSDI
ANLIQEGIVTGIDVSAVQKIVFVLALLYGFGLIFNYFQGFITATVSQRLTKKMRTELSRKIDHMPLKYFDSTSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTVTGIVATLIGFSLMSVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEQAAKEVFHGINTRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCVVGALLVNQQTITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELADESDKTMKLDNAKGDVEFKHVRFGYNEDHMIIKDFSMKA
KAGQKVAIVGPTGAGKTTLVNLLMRFYELNDGEIYIDGTPISQLTRENIHELFCMVLQDTWLFEGTIRDNIVFSKDHVTD
EQVEAACRAVGLHSFIKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDSPMLILDEATSSVDTRTELLIQQAMDQLTV
GKTSFVIAHRLSTIKNADLILVMKDGDIIEMGNHEELLAKGGFYADLYNSQFEHAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=660664 MLD56_RS12215 WP_029518458.1 2734295..2736145(+) (rcrQ) [Paenibacillus peoriae strain ZBSF16]
ATGGATAAGAATGAACACACCGTCGACAGCCAGCAAATGAAAATGAATCAGCCAGGTCCCATGGGCAAAGGTCCCGCGGG
GGGCAGGGGTGGTGGTGAAAAAGCAAATAATTTTAAAAAGACCATCAGCCAGCTTGCATCCTACAGCAAGGCCTATGTGC
CTATGATTATACTCGCTATGGTACTGGCCCTGGTCGGCTCTACCCTCAACGTGATTGGCCCAGATAAGCTCAGTGATATT
GCCAACCTGATTCAGGAAGGAATCGTAACCGGGATTGATGTAAGTGCTGTTCAGAAGATTGTTTTTGTATTAGCGCTTTT
ATATGGATTTGGTCTTATTTTTAACTATTTTCAGGGCTTCATTACAGCAACCGTCTCACAGCGTCTTACAAAGAAGATGC
GAACAGAGCTGTCTCGAAAAATCGATCATATGCCTTTGAAGTATTTTGACTCTACGAGTTATGGTAATGTGCTTAGCCGC
GTAACCAACGATGTCGATACCATCGGACAAACGCTAAACAACAGTCTCGGCACGCTTGTTAGTGCGCTGGCCACTTTCGT
GGGAGCCTTGATTATGATGCTTTATACGAACTGGATCATGACCGTTACCGGAATTGTAGCTACGCTGATCGGCTTTAGCC
TGATGAGCGTGATTATGAAGCATTCACAGAAATATTTTGTAGCACAGCAAGCGGAGCTTGGCCAGATCAACGGTCATATC
GAAGAAACCTATGCTGGTCATAACGTAGTCAAGGTCTATAACGGGGAACAAGCAGCCAAGGAAGTGTTTCATGGCATTAA
CACCCGCTTATATACAAATGCATGGAAGTCCCAGTTCATGTCTGGTCTGATGATGCCAGTCATGATGTTCATTGGAAATT
TTGGTTATGTCGCGGTCTGTGTTGTGGGAGCTTTGCTGGTCAACCAACAGACTATAACCATCGGAACTATTGTCGCCTTC
ATGGTGTATATTCGTCTGTTTACACAGCCCTTGTCACAGCTGGCACAGGCTGCAACCAATCTGCAATCGGCGGCCGCTGC
CAGTGAACGTGTATTCGAATTTTTGGGTGAAGAAGAATTGGCGGATGAAAGTGACAAGACTATGAAGCTGGATAACGCCA
AAGGGGATGTTGAATTCAAACATGTTCGTTTCGGTTATAACGAAGACCATATGATTATCAAAGACTTCTCTATGAAAGCT
AAAGCTGGTCAGAAAGTCGCCATTGTCGGTCCGACAGGCGCTGGTAAGACCACGCTCGTGAATTTACTCATGCGGTTTTA
TGAGCTGAACGATGGAGAAATCTACATTGACGGAACTCCGATCAGCCAATTAACGCGTGAGAATATTCATGAATTATTCT
GTATGGTGCTTCAGGATACCTGGCTGTTCGAAGGAACGATTCGTGACAATATCGTCTTTTCCAAAGATCATGTTACTGAT
GAGCAGGTAGAAGCTGCATGTAGAGCGGTGGGACTGCACAGTTTCATTAAAACACTGCCGCAGGGATATGATACAGTTCT
GGATGACAAAGCCAATCTCTCTGCGGGTCAAAAGCAATTGATTACCATTGCAAGGGCGATGATTGAAGATTCACCTATGC
TCATTCTGGATGAGGCCACAAGCTCGGTCGATACGCGTACGGAATTGCTGATTCAACAAGCGATGGACCAGCTGACTGTG
GGGAAAACCTCCTTTGTGATTGCTCACCGACTTTCGACGATCAAGAATGCGGATCTGATTCTGGTCATGAAGGACGGTGA
CATTATCGAAATGGGTAACCATGAGGAATTGCTAGCAAAAGGCGGCTTCTATGCCGATCTATACAACAGTCAGTTTGAAC
ATGCGTCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(57-331)

ABC transporter (ABC_tran)

(394-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.326

93.669

0.528