Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   MLD56_RS12210 Genome accession   NZ_CP092831
Coordinates   2732539..2734302 (+) Length   587 a.a.
NCBI ID   WP_039275165.1    Uniprot ID   A0A8I1J570
Organism   Paenibacillus peoriae strain ZBSF16     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2727539..2739302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MLD56_RS12185 (MLD56_12185) - 2727645..2727749 (+) 105 WP_023988604.1 DUF6254 family protein -
  MLD56_RS12190 (MLD56_12190) dapA 2728209..2729090 (-) 882 WP_029518463.1 4-hydroxy-tetrahydrodipicolinate synthase -
  MLD56_RS12195 (MLD56_12195) - 2729205..2730077 (+) 873 WP_029518462.1 LysR family transcriptional regulator -
  MLD56_RS12200 (MLD56_12200) - 2730458..2731480 (+) 1023 WP_029518461.1 NADH:flavin oxidoreductase/NADH oxidase -
  MLD56_RS12205 (MLD56_12205) - 2732055..2732465 (+) 411 WP_029518460.1 MarR family transcriptional regulator -
  MLD56_RS12210 (MLD56_12210) rcrP 2732539..2734302 (+) 1764 WP_039275165.1 ABC transporter ATP-binding protein Regulator
  MLD56_RS12215 (MLD56_12215) rcrQ 2734295..2736145 (+) 1851 WP_029518458.1 ABC transporter ATP-binding protein Regulator
  MLD56_RS12220 (MLD56_12220) - 2736267..2736575 (+) 309 WP_029518457.1 hypothetical protein -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64743.03 Da        Isoelectric Point: 8.1896

>NTDB_id=660663 MLD56_RS12210 WP_039275165.1 2732539..2734302(+) (rcrP) [Paenibacillus peoriae strain ZBSF16]
MLKIFKYLKKNEWMLVLCSLAFIVVQVWLDLKLPDYMAEITTKLQTEGTPMSELLIPGSYMLFCAVGSMIASIIVGYFAA
KVAAGLAMRLRAMVFDKALSFSMEEMNNFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIAKIADKNWQWTAS
TGVAVAVLILMLSVIVIFALPSFQKIQRLTDNLNRVTREHLTGLRVVRAYNADQYQEEKFGQANAELTNTNLFANRLMAM
VGPGMTFIMSGLSVSIYWVGTYLINGAAVPDRITLFSNMVVFSSYAVQVVMAFMMVSMIFFLMPRASISAKRIMEVLNTE
SSIVNGHETTGEESVMGQVEFRNVSFKYPDAEEAVLRNISFTAKRGETVAFIGATGSGKTSVINLIPRFYDVTEGEVLVD
GVNVRNYNQQALHNKIGYVPQRAVLFNGTVVSNVSYGVNGRAGASEKLVKEAVGIAQGTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYIFDDSFSALDYRTDRILRSALKKETGHATTLIVGQRIGTIKDADRIIVLDQGEIVGSGT
HEELMTNCSTYQEIAYSQLSKEELIHG

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=660663 MLD56_RS12210 WP_039275165.1 2732539..2734302(+) (rcrP) [Paenibacillus peoriae strain ZBSF16]
ATGCTAAAGATATTCAAATATCTCAAAAAAAATGAATGGATGCTCGTGCTTTGCAGCCTGGCTTTCATCGTTGTGCAGGT
ATGGCTTGATCTGAAGCTACCTGATTATATGGCGGAAATTACGACCAAGCTGCAAACAGAAGGAACACCTATGTCCGAAC
TGCTGATTCCCGGCAGTTACATGTTGTTTTGTGCCGTCGGCAGTATGATTGCATCTATTATTGTCGGCTATTTTGCGGCA
AAGGTCGCGGCAGGGCTGGCCATGCGTCTGCGTGCGATGGTCTTTGACAAGGCCTTATCTTTTTCCATGGAAGAGATGAA
CAACTTTTCAACAGCCAGCCTTATCACCCGCTCCACGAACGATGTTACCCAAATTCAAACGGTGGTTGCGCTGGGGCTGC
AGGTGATCATCAAGGCGCCGATTCTGGCCGTGTGGGCCATTGCAAAAATTGCGGATAAAAACTGGCAGTGGACCGCCTCT
ACAGGAGTGGCTGTGGCTGTCCTGATCCTGATGCTGAGTGTCATTGTTATTTTCGCTCTTCCGAGTTTCCAAAAAATCCA
ACGTCTCACCGATAATCTGAACAGAGTAACACGTGAGCATCTGACCGGGCTTCGGGTGGTGCGCGCTTATAATGCAGATC
AGTATCAGGAGGAGAAGTTCGGGCAGGCTAATGCCGAATTGACGAATACAAACCTGTTTGCGAACCGGTTAATGGCAATG
GTTGGCCCGGGTATGACCTTTATTATGTCGGGTCTGAGTGTCTCGATCTATTGGGTTGGCACTTACCTGATTAACGGAGC
GGCCGTGCCGGACCGCATTACGCTATTCTCTAATATGGTCGTATTCTCCTCTTATGCGGTGCAGGTGGTCATGGCCTTTA
TGATGGTAAGTATGATTTTCTTCCTGATGCCTCGAGCTTCGATTTCTGCCAAACGGATCATGGAGGTTTTGAATACCGAA
TCCAGTATCGTTAACGGGCATGAGACGACTGGAGAAGAAAGCGTTATGGGGCAAGTGGAATTCCGTAATGTCAGCTTCAA
ATATCCGGACGCGGAGGAGGCCGTGCTTCGCAATATTAGCTTTACGGCGAAACGAGGCGAGACGGTTGCCTTTATTGGCG
CTACAGGCAGCGGCAAAACCAGCGTGATCAATCTAATTCCCCGCTTCTATGATGTGACCGAGGGAGAGGTACTCGTGGAC
GGTGTGAATGTCAGGAACTATAATCAGCAGGCACTCCATAACAAAATCGGATATGTTCCCCAGAGAGCTGTACTGTTCAA
CGGTACGGTGGTATCCAACGTTTCGTATGGTGTTAACGGAAGAGCAGGAGCTTCAGAGAAACTCGTCAAAGAAGCCGTTG
GTATTGCTCAAGGAACGGAGTTTGTTGAAAAAATGGATGGTCAGTATCAGGGTAGAATTTCGCAAGGTGGAGCGAACGTG
TCCGGTGGTCAAAAGCAACGGCTGTCGATTGCGCGTGCCATCTACCGACAGCCGGAAATTTATATTTTCGATGATTCCTT
CTCGGCACTAGATTACAGAACAGATCGGATTCTGCGCTCCGCTCTCAAAAAAGAAACCGGCCACGCTACGACACTTATTG
TTGGTCAGCGCATAGGCACTATCAAAGACGCTGACCGAATTATCGTGCTGGACCAGGGGGAGATTGTAGGGAGTGGCACG
CATGAAGAGCTGATGACGAACTGCAGCACCTATCAGGAGATCGCATATTCGCAGCTTTCGAAGGAGGAACTCATACATGG
ATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(17-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.254

100

0.533