Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MLC69_RS25885 Genome accession   NZ_CP092830
Coordinates   5684917..5686284 (-) Length   455 a.a.
NCBI ID   WP_003235145.1    Uniprot ID   A0A0R2ZG22
Organism   Pseudomonas azotoformans strain ZY-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5679917..5691284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MLC69_RS25865 (MLC69_25865) yjiA 5680852..5681811 (-) 960 WP_078050258.1 GTPase -
  MLC69_RS25870 (MLC69_25870) - 5681959..5682156 (-) 198 WP_003194308.1 YbdD/YjiX family protein -
  MLC69_RS25875 (MLC69_25875) - 5682172..5684238 (-) 2067 WP_078050259.1 carbon starvation CstA family protein -
  MLC69_RS25880 (MLC69_25880) - 5684413..5684781 (+) 369 WP_078050260.1 PilZ domain-containing protein -
  MLC69_RS25885 (MLC69_25885) radA 5684917..5686284 (-) 1368 WP_003235145.1 DNA repair protein RadA Machinery gene
  MLC69_RS25890 (MLC69_25890) - 5686320..5686859 (-) 540 WP_078050261.1 ankyrin repeat domain-containing protein -
  MLC69_RS25895 (MLC69_25895) katB 5686967..5688508 (-) 1542 WP_078050264.1 catalase KatB -
  MLC69_RS25900 (MLC69_25900) mscL 5688796..5689215 (+) 420 WP_078050265.1 large-conductance mechanosensitive channel protein MscL -
  MLC69_RS25905 (MLC69_25905) - 5689261..5690037 (-) 777 WP_078050266.1 ferredoxin--NADP reductase -
  MLC69_RS25910 (MLC69_25910) - 5690417..5691127 (+) 711 WP_078050267.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48773.25 Da        Isoelectric Point: 6.8987

>NTDB_id=660641 MLC69_RS25885 WP_003235145.1 5684917..5686284(-) (radA) [Pseudomonas azotoformans strain ZY-1]
MAKAKRMYGCTECGATFPKWAGQCTECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGIQIIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=660641 MLC69_RS25885 WP_003235145.1 5684917..5686284(-) (radA) [Pseudomonas azotoformans strain ZY-1]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAGTGCACCGAGTG
CGGCGCGTGGAACACCCTGACTGAAACCATGATCGAGAGTGGCGGCGCCGCAGCCCCCACCGGTCGTGCCGGCTGGACCG
GGCAACAGGCACAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAGATCCCGCGTTTCTCCACCGCGTCCGGCGAGTTG
GACCGCGTGCTGGGCGGCGGCCTGGTGGACGGCTCAGTGGTGCTGATCGGTGGTGATCCGGGCATCGGCAAGTCGACCAT
CCTGCTGCAAACCTTGTGCAGCATCGCCAGTCGCATGCCGGCGCTGTATGTCACCGGCGAAGAATCCCAGCAGCAAGTCG
CCATGCGCGCCCGTCGCTTGGGGTTGCCCCAGGACCAGTTGCGGGTCATGACCGAAACCTGCATCGAAAGCATCATTGCC
ACGGCCCGTATCGAAAAGCCCAAGGTGATGGTAATCGACTCGATCCAGACGATCTTCACTGAGCAATTGCAGTCGGCGCC
GGGTGGCGTGTCCCAGGTGCGCGAGAGTGCGGCGCTGCTGGTGCGGTACGCCAAGCAGAGCGGCACGGCGATTTTCCTGG
TCGGCCATGTGACCAAGGAGGGCGCTTTGGCCGGGCCACGGGTGCTGGAGCATATGGTCGACACCGTGCTGTATTTCGAA
GGTGAGTCCGATGGCCGCCTACGTTTGCTGCGAGCGGTGAAGAACCGTTTTGGCGCGGTAAACGAGTTGGGTGTGTTTGC
CATGACTGACCGTGGGCTGAAAGAAGTCTCCAACCCGTCGGCGATCTTTCTGACCCGCGCCCAGGAAGAAGTCCCGGGCA
GTGTGGTGATGGCCACGTGGGAAGGCACCCGGCCGATGCTGGTTGAAGTCCAGGCGTTGGTGGATGATAGCCATTTGGCC
AACCCGCGCCGTGTGACCCTGGGCCTGGATCAGAACCGTCTGGCGATGCTGCTGGCCGTGTTGCACCGCCACGGCGGTAT
TCCCACCCACGACCAGGACGTGTTCCTCAACGTAGTCGGCGGGGTCAAGGTGCTGGAGACCGCGTCCGACCTGGCATTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCATTGCCCCATGACTTGCTGGTGTTCGGCGAAGTCGGCTTGTCGGGC
GAGGTGCGCCCGGTGCCGAGTGGGCAGGAACGTTTGAAGGAGGCGGCCAAACATGGCTTCAAGCGGGCGATCGTGCCTAA
GGGCAATGCGCCCAAGGAATCACCGCCGGGCATTCAGATCATTGGGGTGACGCGCCTGGAACAAGCGCTGGATGCACTCT
TCGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R2ZG22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

47.149

100

0.473
  radA Streptococcus mitis NCTC 12261

46.93

100

0.47
  radA Streptococcus pneumoniae Rx1

46.93

100

0.47
  radA Streptococcus pneumoniae D39

46.93

100

0.47
  radA Streptococcus pneumoniae R6

46.93

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.47