Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OG564_RS23645 Genome accession   NZ_CP108438
Coordinates   5248005..5249129 (-) Length   374 a.a.
NCBI ID   WP_266672362.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01280     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5243005..5254129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG564_RS23635 (OG564_23630) gyrB 5245093..5247192 (-) 2100 WP_329434579.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  OG564_RS23640 (OG564_23635) - 5247466..5248008 (-) 543 WP_116512070.1 DciA family protein -
  OG564_RS23645 (OG564_23640) recF 5248005..5249129 (-) 1125 WP_266672362.1 DNA replication/repair protein RecF Machinery gene
  OG564_RS23650 (OG564_23645) gnd 5249233..5250108 (-) 876 WP_266672361.1 decarboxylating 6-phosphogluconate dehydrogenase -
  OG564_RS23655 (OG564_23650) dnaN 5250286..5251416 (-) 1131 WP_266672359.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40912.59 Da        Isoelectric Point: 6.7125

>NTDB_id=660591 OG564_RS23645 WP_266672362.1 5248005..5249129(-) (recF) [Streptomyces sp. NBC_01280]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGAERAVIRAAVRQGERQ
QLIELELNPGKANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQ
RNTLLKSAALARRHGGRSMDLSTLDVWDQHLARVGAELLAQRFDLIATLQPLADKAYEQLAPGGGPLALEYKPSSPEIDG
HAREELYEQLMAALEAARKQEIERGVTLVGPHRDDLVLKLGQLPAKGYASHGESWSYALALRLASYDLLRAEGNEPVLVL
DDVFAELDARRRERLAELVAPGEQVLVTAAVDDDVPGVLAGARYAVSDGTVERI

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=660591 OG564_RS23645 WP_266672362.1 5248005..5249129(-) (recF) [Streptomyces sp. NBC_01280]
ATGCACGTGACGCATCTGTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTCCCTCTCGATCCGGGCGTCACCGC
GTTCGTGGGCCCGAACGGGCAGGGCAAGACCAACCTCGTCGAGGCCGTCGGCTATCTCGCCACCCTCGGCAGCCACCGGG
TCTCCTCGGACGCGCCGCTGGTCCGCATGGGCGCCGAGCGCGCCGTCATCCGGGCCGCGGTCCGGCAGGGCGAGCGACAG
CAGCTCATCGAGCTCGAACTCAACCCGGGCAAGGCGAACCGCGCCAGGATCAACCGGTCCTCGCAGGTCAGACCCCGTGA
TGTGCTCGGCATCGTGCGCACGGTCCTGTTCGCGCCGGAGGACCTCGCGCTCGTCAAGGGCGACCCCGGCGAGCGCCGCC
GCTTTCTCGACGAGCTGATCACGGCCCGCTCCCCGCGCATGGCCGGTGTCCGGTCCGACTACGACCGCGTGCTCAAGCAG
CGCAACACGCTCCTCAAGTCGGCCGCGCTCGCCCGCAGGCACGGCGGCCGGTCCATGGACCTGTCGACCCTCGACGTGTG
GGACCAGCACCTCGCGCGCGTGGGCGCCGAGCTGCTCGCGCAGCGGTTCGACCTGATAGCCACGCTCCAGCCGCTCGCCG
ACAAGGCGTACGAACAGCTGGCGCCCGGCGGCGGCCCGCTCGCTCTGGAATACAAGCCGTCCTCGCCCGAAATCGACGGC
CACGCGCGCGAAGAGCTCTACGAGCAGCTGATGGCCGCCCTCGAAGCGGCCCGCAAACAGGAGATCGAGCGGGGCGTGAC
CCTCGTCGGACCGCACCGCGACGACCTGGTCCTCAAGCTCGGCCAGCTGCCGGCGAAGGGGTACGCCAGCCATGGCGAGT
CCTGGTCGTACGCGCTGGCGCTGCGCCTGGCCTCCTACGACCTGCTGCGGGCCGAGGGGAACGAGCCGGTGCTCGTGCTC
GACGACGTCTTCGCGGAGCTCGACGCGCGGCGCAGGGAGCGTCTCGCCGAGCTGGTCGCCCCCGGCGAGCAGGTCCTGGT
GACGGCCGCGGTGGACGACGACGTGCCGGGTGTCCTGGCGGGCGCACGGTACGCGGTGTCCGACGGCACGGTGGAGCGGA
TATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.921

95.187

0.361