Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MK860_RS07015 Genome accession   NZ_CP092829
Coordinates   1424504..1424782 (+) Length   92 a.a.
NCBI ID   WP_034325036.1    Uniprot ID   A0A081L6T2
Organism   Bacillus pumilus strain MS32     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1419504..1429782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK860_RS06990 (MK860_06970) - 1419596..1419871 (-) 276 WP_034619939.1 hypothetical protein -
  MK860_RS06995 (MK860_06975) - 1420015..1421634 (+) 1620 WP_065097200.1 ATP-binding cassette domain-containing protein -
  MK860_RS07000 (MK860_06980) - 1421675..1422907 (-) 1233 WP_278178916.1 aminopeptidase -
  MK860_RS07005 (MK860_06985) - 1423014..1423145 (-) 132 WP_003210922.1 protein YkpC -
  MK860_RS07010 (MK860_06990) mreBH 1423220..1424227 (-) 1008 WP_012009812.1 rod-share determining protein MreBH -
  MK860_RS07015 (MK860_06995) abrB 1424504..1424782 (+) 279 WP_034325036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MK860_RS07020 (MK860_07000) - 1424927..1426237 (+) 1311 WP_278178922.1 ATP-binding protein -
  MK860_RS07025 (MK860_07005) - 1426242..1427078 (+) 837 WP_065097204.1 gamma-glutamylcyclotransferase family protein -
  MK860_RS07030 (MK860_07010) - 1427116..1427784 (+) 669 WP_044142031.1 TrkA family potassium uptake protein -
  MK860_RS07035 (MK860_07015) ade 1428048..1429778 (+) 1731 WP_065097205.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10318.03 Da        Isoelectric Point: 4.8604

>NTDB_id=660590 MK860_RS07015 WP_034325036.1 1424504..1424782(+) (abrB) [Bacillus pumilus strain MS32]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPQGVCLMTGEITSENHEYGNGKINLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=660590 MK860_RS07015 WP_034325036.1 1424504..1424782(+) (abrB) [Bacillus pumilus strain MS32]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGATGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATTGCAATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCTCAAGGTGTTT
GTCTCATGACTGGTGAGATTACTTCTGAGAATCATGAATATGGAAATGGTAAAATTAATTTAAGCGCTGAAGGCGCAGAA
CTACTGCTAAAAGAGCTGCAAGAAGCCCTTCAACAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081L6T2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.044

98.913

0.554