Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   MK860_RS06770 Genome accession   NZ_CP092829
Coordinates   1382834..1383295 (-) Length   153 a.a.
NCBI ID   WP_044139814.1    Uniprot ID   A0AB34QXM2
Organism   Bacillus pumilus strain MS32     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1377834..1388295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK860_RS06745 (MK860_06725) - 1378442..1379326 (+) 885 WP_065097175.1 cation diffusion facilitator family transporter -
  MK860_RS06750 (MK860_06730) - 1379389..1379541 (-) 153 WP_162839369.1 hypothetical protein -
  MK860_RS06755 (MK860_06735) - 1379843..1380382 (+) 540 WP_065097176.1 RDD family protein -
  MK860_RS06760 (MK860_06740) - 1380508..1381818 (+) 1311 WP_113767602.1 MFS transporter -
  MK860_RS06765 (MK860_06745) - 1381892..1382800 (+) 909 WP_044139813.1 chemotaxis protein -
  MK860_RS06770 (MK860_06750) kre 1382834..1383295 (-) 462 WP_044139814.1 YkyB family protein Regulator
  MK860_RS06775 (MK860_06755) - 1383527..1384420 (-) 894 WP_065097177.1 helix-turn-helix domain-containing protein -
  MK860_RS06780 (MK860_06760) - 1384533..1385429 (+) 897 WP_113767603.1 DMT family transporter -
  MK860_RS06785 (MK860_06765) - 1385626..1385841 (-) 216 WP_050945147.1 hypothetical protein -
  MK860_RS06790 (MK860_06770) - 1386009..1386185 (+) 177 WP_192878355.1 hypothetical protein -
  MK860_RS06795 (MK860_06775) - 1386450..1387727 (-) 1278 WP_044142063.1 MFS transporter -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17683.29 Da        Isoelectric Point: 10.2294

>NTDB_id=660588 MK860_RS06770 WP_044139814.1 1382834..1383295(-) (kre) [Bacillus pumilus strain MS32]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGKKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=660588 MK860_RS06770 WP_044139814.1 1382834..1383295(-) (kre) [Bacillus pumilus strain MS32]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGTCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAAAAAAGTGGGCCTACATTTCTCTAACAATCCCAAATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACCAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAAATCCTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTATACGAAACCCGTCTTCAAACGACTAGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

76.623

100

0.771