Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | MK860_RS06600 | Genome accession | NZ_CP092829 |
| Coordinates | 1346016..1348124 (-) | Length | 702 a.a. |
| NCBI ID | WP_278178823.1 | Uniprot ID | - |
| Organism | Bacillus pumilus strain MS32 | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1341016..1353124
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MK860_RS06575 (MK860_06555) | - | 1341605..1341847 (+) | 243 | WP_065097155.1 | aspartyl-phosphate phosphatase Spo0E family protein | - |
| MK860_RS06580 (MK860_06560) | - | 1341894..1343399 (-) | 1506 | WP_113767592.1 | ATP-binding protein | - |
| MK860_RS06585 (MK860_06565) | - | 1343605..1344060 (+) | 456 | WP_278178820.1 | MarR family transcriptional regulator | - |
| MK860_RS06590 (MK860_06570) | motB | 1344090..1344854 (-) | 765 | WP_106067340.1 | flagellar motor protein MotB | - |
| MK860_RS06595 (MK860_06575) | motA | 1344847..1345641 (-) | 795 | WP_003212085.1 | flagellar motor stator protein MotA | - |
| MK860_RS06600 (MK860_06580) | clpC | 1346016..1348124 (-) | 2109 | WP_278178823.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| MK860_RS06605 (MK860_06585) | - | 1348368..1349411 (+) | 1044 | WP_065097159.1 | hypothetical protein | - |
| MK860_RS06610 (MK860_06590) | queC | 1349687..1350343 (+) | 657 | WP_065097160.1 | 7-cyano-7-deazaguanine synthase QueC | - |
| MK860_RS06615 (MK860_06595) | queD | 1350344..1350784 (+) | 441 | WP_278178828.1 | 6-carboxytetrahydropterin synthase QueD | - |
| MK860_RS06620 (MK860_06600) | queE | 1350777..1351508 (+) | 732 | WP_278178830.1 | 7-carboxy-7-deazaguanine synthase QueE | - |
| MK860_RS06625 (MK860_06605) | queF | 1351524..1352021 (+) | 498 | WP_003211403.1 | preQ(1) synthase | - |
| MK860_RS06630 (MK860_06610) | - | 1352490..1352708 (+) | 219 | WP_044139792.1 | hypothetical protein | - |
| MK860_RS06635 (MK860_06615) | - | 1352829..1353017 (-) | 189 | WP_003211747.1 | DUF2187 family protein | - |
Sequence
Protein
Download Length: 702 a.a. Molecular weight: 78212.80 Da Isoelectric Point: 5.0810
>NTDB_id=660587 MK860_RS06600 WP_278178823.1 1346016..1348124(-) (clpC) [Bacillus pumilus strain MS32]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSGQEQAGHTQNVEQPKQKSLLDELG
RNLTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSL
VANTGIRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDA
ALERRFQPVIVDEPTQAEAIEILKGIQDKYESYHGVTYSAEAIQACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDA
ASEDELTNRLTEIAAEKHAALKEEQYEKAAKLRDEEEAIEARLQNKTNDKEHVVTAEDIQAIVEQKTGIPVGKLQADEQT
KMKEIDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEY
MEKHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMT
SNAGSTDKTVKVGFQSDQEEAIEEQSLIDSLSAYFKPEFLNRFDSIIQFDSLDRDDLVKIVDLLLNELSEQLKEQSLTVH
VTKEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEKFSGFTVDVEDNEIVVKKG
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSGQEQAGHTQNVEQPKQKSLLDELG
RNLTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSL
VANTGIRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDA
ALERRFQPVIVDEPTQAEAIEILKGIQDKYESYHGVTYSAEAIQACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDA
ASEDELTNRLTEIAAEKHAALKEEQYEKAAKLRDEEEAIEARLQNKTNDKEHVVTAEDIQAIVEQKTGIPVGKLQADEQT
KMKEIDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEY
MEKHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMT
SNAGSTDKTVKVGFQSDQEEAIEEQSLIDSLSAYFKPEFLNRFDSIIQFDSLDRDDLVKIVDLLLNELSEQLKEQSLTVH
VTKEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEKFSGFTVDVEDNEIVVKKG
Nucleotide
Download Length: 2109 bp
>NTDB_id=660587 MK860_RS06600 WP_278178823.1 1346016..1348124(-) (clpC) [Bacillus pumilus strain MS32]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACAATTCGCCTGAATATGCAAGTGAATTCATCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTACACCTCTTTGATGGAGCAATCAAAAATGAAAATGGGACCTCAATTGTTCGGAGGAAGCTCAT
TCTTCTCTGGGCAAGAGCAAGCAGGACATACGCAAAACGTAGAGCAGCCAAAGCAAAAAAGCTTACTCGATGAACTTGGC
CGCAATTTAACAGATGGCGCAAATGCTGGTTTAATTGATCCAGTCATCGGCCGTGATGAAGAAGTCGCAAGAGTCATTGA
GATTTTAAATAGAAGAAATAAAAACAATCCTGTCCTCATTGGTGAACCAGGTGTTGGGAAAACAGCGATCGCTGAAGGAC
TTGCACTGAAAATTGCAAGTGGCGATGTACCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTCTCCTCCCTT
GTAGCGAATACAGGGATACGTGGTCAATTTGAGGAAAGAATGAAGCAGTTAATTAAAGAACTACAAAGCCGTAAAAATAT
TATCTTATTTGTAGATGAAATCCATCTTCTTGTAGGCGCAGGCTCTGCTGAAGGGTCAATGGATGCTGGCAACATTTTAA
AACCAGCTCTTGCACGAGGCGAGCTCCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGTCAAATTGAAAAAGATGCC
GCACTTGAACGACGCTTTCAGCCCGTCATTGTAGATGAGCCAACACAAGCTGAAGCGATCGAGATTTTAAAAGGCATTCA
AGATAAGTACGAAAGCTATCATGGCGTCACCTATTCAGCGGAAGCCATTCAAGCGTGTGTTCAATTATCTTCCCGGTATA
TTCAAGACCGTCATTTGCCGGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAAGCGAACCTCTCCATTGATGCA
GCAAGTGAAGATGAACTAACGAATCGTCTGACAGAAATCGCTGCTGAAAAACATGCTGCTTTAAAAGAAGAACAATATGA
AAAAGCGGCGAAGCTTCGAGATGAAGAAGAAGCCATTGAAGCAAGACTTCAAAACAAAACAAATGACAAAGAACATGTCG
TCACAGCAGAAGACATTCAAGCCATTGTGGAACAAAAAACAGGCATCCCTGTCGGCAAACTGCAAGCAGACGAACAAACC
AAAATGAAAGAAATTGACGTCCGCTTAAAAGCACGAGTGATCGGCCAGGAACATGCGGTTGAAAAGGTAGCGAAAGCTGT
GAAAAGAAGCAGAGCCGGCTTAAAATCGAAACATAGACCAACTGGCTCCTTCCTTTTCGTTGGACCAACAGGTGTCGGGA
AAACCGAATTGTCGAAAACGCTAGCTGAAGAATTATTTGGTTCAAGAGATGCGATCATCCGTTTAGATATGAGTGAGTAC
ATGGAGAAACACTCAGTATCTAAGCTCATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCAGGCCAGCTGACAGA
AAAAGTGCGCAGAAAACCATACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACATCCTGATGTGCAGCATATGTTCC
TTCAAATCATGGAAGATGGCCGGTTAACAGACAGCCAAGGCAGAACCGTCAGCTTTAAAGATACAGTCATCATCATGACA
AGTAACGCAGGCAGCACAGATAAAACGGTCAAAGTCGGCTTCCAGTCTGATCAGGAAGAAGCGATTGAAGAACAATCACT
CATTGATTCACTCAGCGCCTATTTCAAACCAGAATTTTTGAACCGTTTTGACAGCATCATTCAGTTTGACTCATTAGATC
GAGATGATTTAGTGAAGATTGTGGATCTTCTGCTCAATGAGCTGTCAGAACAATTAAAAGAGCAGAGTTTGACAGTCCAT
GTGACAAAAGAAGCGAAAGAAAAAATTGCAGAACTTGGATATCATCCTGCATTTGGTGCTCGTCCACTGCGAAGAACCAT
TCAAGAGCACGTTGAAGATCAAATGACGGAAATATTGCTTGAAGAAGAAAAGTTTTCAGGATTTACTGTAGATGTTGAAG
ATAACGAAATTGTCGTAAAAAAAGGATAG
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACAATTCGCCTGAATATGCAAGTGAATTCATCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTACACCTCTTTGATGGAGCAATCAAAAATGAAAATGGGACCTCAATTGTTCGGAGGAAGCTCAT
TCTTCTCTGGGCAAGAGCAAGCAGGACATACGCAAAACGTAGAGCAGCCAAAGCAAAAAAGCTTACTCGATGAACTTGGC
CGCAATTTAACAGATGGCGCAAATGCTGGTTTAATTGATCCAGTCATCGGCCGTGATGAAGAAGTCGCAAGAGTCATTGA
GATTTTAAATAGAAGAAATAAAAACAATCCTGTCCTCATTGGTGAACCAGGTGTTGGGAAAACAGCGATCGCTGAAGGAC
TTGCACTGAAAATTGCAAGTGGCGATGTACCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTCTCCTCCCTT
GTAGCGAATACAGGGATACGTGGTCAATTTGAGGAAAGAATGAAGCAGTTAATTAAAGAACTACAAAGCCGTAAAAATAT
TATCTTATTTGTAGATGAAATCCATCTTCTTGTAGGCGCAGGCTCTGCTGAAGGGTCAATGGATGCTGGCAACATTTTAA
AACCAGCTCTTGCACGAGGCGAGCTCCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGTCAAATTGAAAAAGATGCC
GCACTTGAACGACGCTTTCAGCCCGTCATTGTAGATGAGCCAACACAAGCTGAAGCGATCGAGATTTTAAAAGGCATTCA
AGATAAGTACGAAAGCTATCATGGCGTCACCTATTCAGCGGAAGCCATTCAAGCGTGTGTTCAATTATCTTCCCGGTATA
TTCAAGACCGTCATTTGCCGGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAAGCGAACCTCTCCATTGATGCA
GCAAGTGAAGATGAACTAACGAATCGTCTGACAGAAATCGCTGCTGAAAAACATGCTGCTTTAAAAGAAGAACAATATGA
AAAAGCGGCGAAGCTTCGAGATGAAGAAGAAGCCATTGAAGCAAGACTTCAAAACAAAACAAATGACAAAGAACATGTCG
TCACAGCAGAAGACATTCAAGCCATTGTGGAACAAAAAACAGGCATCCCTGTCGGCAAACTGCAAGCAGACGAACAAACC
AAAATGAAAGAAATTGACGTCCGCTTAAAAGCACGAGTGATCGGCCAGGAACATGCGGTTGAAAAGGTAGCGAAAGCTGT
GAAAAGAAGCAGAGCCGGCTTAAAATCGAAACATAGACCAACTGGCTCCTTCCTTTTCGTTGGACCAACAGGTGTCGGGA
AAACCGAATTGTCGAAAACGCTAGCTGAAGAATTATTTGGTTCAAGAGATGCGATCATCCGTTTAGATATGAGTGAGTAC
ATGGAGAAACACTCAGTATCTAAGCTCATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCAGGCCAGCTGACAGA
AAAAGTGCGCAGAAAACCATACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACATCCTGATGTGCAGCATATGTTCC
TTCAAATCATGGAAGATGGCCGGTTAACAGACAGCCAAGGCAGAACCGTCAGCTTTAAAGATACAGTCATCATCATGACA
AGTAACGCAGGCAGCACAGATAAAACGGTCAAAGTCGGCTTCCAGTCTGATCAGGAAGAAGCGATTGAAGAACAATCACT
CATTGATTCACTCAGCGCCTATTTCAAACCAGAATTTTTGAACCGTTTTGACAGCATCATTCAGTTTGACTCATTAGATC
GAGATGATTTAGTGAAGATTGTGGATCTTCTGCTCAATGAGCTGTCAGAACAATTAAAAGAGCAGAGTTTGACAGTCCAT
GTGACAAAAGAAGCGAAAGAAAAAATTGCAGAACTTGGATATCATCCTGCATTTGGTGCTCGTCCACTGCGAAGAACCAT
TCAAGAGCACGTTGAAGATCAAATGACGGAAATATTGCTTGAAGAAGAAAAGTTTTCAGGATTTACTGTAGATGTTGAAG
ATAACGAAATTGTCGTAAAAAAAGGATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Lactococcus lactis subsp. cremoris KW2 |
56.369 |
100 |
0.593 |
| clpE | Streptococcus mutans UA159 |
57.479 |
100 |
0.591 |
| clpE | Streptococcus pneumoniae Rx1 |
54.972 |
100 |
0.567 |
| clpE | Streptococcus pneumoniae D39 |
54.972 |
100 |
0.567 |
| clpE | Streptococcus pneumoniae R6 |
54.972 |
100 |
0.567 |
| clpE | Streptococcus pneumoniae TIGR4 |
54.972 |
100 |
0.567 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
53.274 |
95.726 |
0.51 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
47.17 |
90.598 |
0.427 |
| clpC | Streptococcus thermophilus LMD-9 |
46.166 |
91.026 |
0.42 |
| clpC | Streptococcus thermophilus LMG 18311 |
46.009 |
91.026 |
0.419 |
| clpC | Streptococcus pneumoniae TIGR4 |
45.455 |
89.316 |
0.406 |
| clpC | Streptococcus pneumoniae Rx1 |
45.659 |
88.604 |
0.405 |
| clpC | Streptococcus pneumoniae D39 |
45.659 |
88.604 |
0.405 |
| clpC | Streptococcus mutans UA159 |
44.444 |
89.744 |
0.399 |