Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MK860_RS05180 Genome accession   NZ_CP092829
Coordinates   1074212..1075162 (+) Length   316 a.a.
NCBI ID   WP_065098909.1    Uniprot ID   -
Organism   Bacillus pumilus strain MS32     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1069212..1080162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK860_RS05160 (MK860_05150) - 1070434..1070916 (+) 483 WP_065098911.1 hypothetical protein -
  MK860_RS05165 (MK860_05155) - 1070952..1072391 (-) 1440 WP_278178500.1 PLP-dependent aminotransferase family protein -
  MK860_RS05170 (MK860_05160) - 1072536..1073705 (+) 1170 WP_278178503.1 MFS transporter -
  MK860_RS05175 (MK860_05165) - 1073770..1074045 (+) 276 WP_044140712.1 barstar family protein -
  MK860_RS05180 (MK860_05170) ceuB 1074212..1075162 (+) 951 WP_065098909.1 ABC transporter permease Machinery gene
  MK860_RS05185 (MK860_05175) - 1075155..1076105 (+) 951 WP_065098908.1 iron chelate uptake ABC transporter family permease subunit -
  MK860_RS05190 (MK860_05180) - 1076096..1076854 (+) 759 WP_044140715.1 ATP-binding cassette domain-containing protein -
  MK860_RS05195 (MK860_05185) - 1076877..1077821 (+) 945 WP_065098906.1 siderophore ABC transporter substrate-binding protein -
  MK860_RS05200 (MK860_05190) - 1077941..1079091 (+) 1151 WP_106067777.1 IS3 family transposase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34876.21 Da        Isoelectric Point: 9.6341

>NTDB_id=660577 MK860_RS05180 WP_065098909.1 1074212..1075162(+) (ceuB) [Bacillus pumilus strain MS32]
MKLYQLSLLFVCLACVSLFVGVQDLSILQLFHLTDEQVHTLVSSRIPRLMSIVLAGMSLSLCGFIMQSMTRNKFVSPTTA
GTMDWAKLGILAAMLVFTHASPLMKMGIAFLFTLAGNLLFLKILRHIKVNDTIYVPLVGLMFGGIVSSISTFIAYKYDLI
QNVSAWLQGDFSLIVQGRYELLYVSVPLLIIAYLYADRFTVAGMGESFAINLGLTYKRVMAVGLVIVSMITSVTILTVGM
LPFLGLIIPNIVSIYRGDHLKKSLPHTALLGAIFVLICDVLGRVIIYPYEISVGLMVGIIGSGIFLYMLLRRKHYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=660577 MK860_RS05180 WP_065098909.1 1074212..1075162(+) (ceuB) [Bacillus pumilus strain MS32]
ATGAAGTTGTATCAATTAAGTTTATTATTTGTATGTTTGGCATGTGTATCACTGTTTGTCGGTGTACAGGATCTGTCCAT
TTTACAGCTGTTTCATTTAACAGATGAACAAGTGCATACGTTGGTTTCAAGTCGCATCCCGCGTCTCATGAGTATTGTGC
TTGCTGGCATGAGCCTTAGTTTATGCGGCTTTATTATGCAAAGCATGACGAGGAATAAATTTGTTTCACCAACCACTGCA
GGAACGATGGATTGGGCGAAGCTTGGTATTTTAGCAGCAATGCTTGTTTTTACACATGCGAGCCCGCTCATGAAAATGGG
AATCGCGTTTCTATTTACTTTAGCTGGGAATCTTCTTTTCTTAAAAATCCTGCGGCATATTAAGGTGAACGATACGATCT
ATGTACCTTTAGTCGGTTTAATGTTTGGCGGGATTGTCAGTTCAATATCTACGTTTATAGCCTATAAATATGATCTGATT
CAAAACGTATCCGCATGGCTTCAAGGGGATTTTTCTCTTATTGTTCAGGGGCGTTATGAACTTCTCTATGTGAGTGTTCC
ACTATTGATCATCGCGTATTTATATGCTGACCGCTTTACAGTGGCGGGAATGGGTGAGAGCTTTGCCATCAACTTAGGTT
TAACGTATAAACGTGTGATGGCGGTTGGTTTGGTGATTGTTTCGATGATTACATCTGTCACCATATTAACTGTCGGGATG
CTACCATTCCTAGGCTTAATCATTCCGAATATTGTATCGATCTACCGCGGCGATCACTTGAAAAAGAGCCTTCCGCATAC
AGCCTTACTAGGAGCCATTTTTGTTCTGATTTGTGATGTGCTCGGAAGGGTAATCATTTATCCATATGAAATTTCAGTTG
GGCTCATGGTAGGCATCATCGGAAGTGGGATCTTCCTGTACATGTTATTAAGGAGGAAACACTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.827

95.253

0.494