Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   MK860_RS05150 Genome accession   NZ_CP092829
Coordinates   1068285..1068863 (+) Length   192 a.a.
NCBI ID   WP_003212419.1    Uniprot ID   -
Organism   Bacillus pumilus strain MS32     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1063285..1073863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK860_RS05130 (MK860_05120) - 1063776..1065071 (-) 1296 WP_065098915.1 globin-coupled sensor protein -
  MK860_RS05135 (MK860_05125) - 1065163..1066695 (-) 1533 WP_278178495.1 FAD-dependent oxidoreductase -
  MK860_RS05140 (MK860_05130) - 1066841..1067701 (+) 861 WP_044140706.1 SDR family oxidoreductase -
  MK860_RS05145 (MK860_05135) - 1067765..1067995 (-) 231 WP_003210924.1 IDEAL domain-containing protein -
  MK860_RS05150 (MK860_05140) comK 1068285..1068863 (+) 579 WP_003212419.1 competence protein ComK Regulator
  MK860_RS05155 (MK860_05145) - 1069014..1070120 (+) 1107 WP_265208939.1 D-TA family PLP-dependent enzyme -
  MK860_RS05160 (MK860_05150) - 1070434..1070916 (+) 483 WP_065098911.1 hypothetical protein -
  MK860_RS05165 (MK860_05155) - 1070952..1072391 (-) 1440 WP_278178500.1 PLP-dependent aminotransferase family protein -
  MK860_RS05170 (MK860_05160) - 1072536..1073705 (+) 1170 WP_278178503.1 MFS transporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22376.45 Da        Isoelectric Point: 8.7996

>NTDB_id=660576 MK860_RS05150 WP_003212419.1 1068285..1068863(+) (comK) [Bacillus pumilus strain MS32]
MSGISETPLDSYVINQTTMAILPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVIFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=660576 MK860_RS05150 WP_003212419.1 1068285..1068863(+) (comK) [Bacillus pumilus strain MS32]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGATCCTTCCGGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCCCTGCAAATTATTGAACGCA
GCTGCCGATTCTTCGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGAATTTCTCACAAGCCTCCC
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAGGAATCATCCCTCGGAGACACGGTGGTCATCTTTACAAATGAGCAAACCGTCAAACTCG
ATGTCTCATATAAGTCATTTGAGAGTCAGGTGCACAGAACAGCGTATCTCCGAACGAAATTTCAAGATCGCCTTGATGGT
GGTCTTCCTAAAAAACAAGAATTTATGCTGTATCCAAAGGAACAACAGCTCAACCTTGTATACGATTTTATATTAAGGGA
GCTTCGGAACAGATATTAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

60.938

100

0.609