Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   MK860_RS04215 Genome accession   NZ_CP092829
Coordinates   892973..893764 (+) Length   263 a.a.
NCBI ID   WP_106067546.1    Uniprot ID   -
Organism   Bacillus pumilus strain MS32     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 887973..898764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK860_RS04180 (MK860_04170) - 888055..888603 (+) 549 WP_003217810.1 thioredoxin family protein -
  MK860_RS04185 (MK860_04175) - 888940..889407 (+) 468 WP_003217856.1 DUF393 domain-containing protein -
  MK860_RS04190 (MK860_04180) - 889444..890700 (-) 1257 WP_065097460.1 transcriptional regulator -
  MK860_RS04195 (MK860_04185) - 890975..891562 (+) 588 WP_044139694.1 nitroreductase -
  MK860_RS04200 (MK860_04190) - 891602..891757 (-) 156 WP_003217852.1 YfhD family protein -
  MK860_RS04205 (MK860_04195) - 891819..891929 (-) 111 WP_017358836.1 YfhE family protein -
  MK860_RS04210 (MK860_04200) - 891982..892878 (-) 897 WP_106067547.1 TIGR01777 family oxidoreductase -
  MK860_RS04215 (MK860_04205) recX 892973..893764 (+) 792 WP_106067546.1 recombination regulator RecX Regulator
  MK860_RS04220 (MK860_04210) - 893768..894082 (+) 315 WP_106030246.1 YfhH family protein -
  MK860_RS04225 (MK860_04215) - 894248..894421 (-) 174 WP_003217811.1 YpzG family protein -
  MK860_RS04230 (MK860_04220) - 894447..894597 (-) 151 Protein_792 small, acid-soluble spore protein K -
  MK860_RS04235 (MK860_04225) - 894714..894986 (+) 273 WP_044139690.1 YfhJ family protein -
  MK860_RS04240 (MK860_04230) - 895276..896259 (+) 984 WP_003217835.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30607.02 Da        Isoelectric Point: 6.9987

>NTDB_id=660572 MK860_RS04215 WP_106067546.1 892973..893764(+) (recX) [Bacillus pumilus strain MS32]
MPYITKISAQKNNTERVNIFLDEKYAFSVDLDVLVQHDLKKGKELDEADIIDIQFGDAVKKGFQQAVDYLSYRMRSVKEV
TDYLTKKEIPAPAISEIIHKLKHYKYVNDLEFAEAYVSTHRKTNSKGPSVLKKELKLKGIDDDNIEQALSQYPDDLQLEE
AVKQVQKLVRKEKNRSAKEIEQRIKLQLQRKGFSFGIIDKALQEAYDGQEEEKEEEALLYMMEKAKRKVGYDGSFEKKMK
VKQFLFRKGFDLDTIDHVLDKGE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=660572 MK860_RS04215 WP_106067546.1 892973..893764(+) (recX) [Bacillus pumilus strain MS32]
ATGCCCTATATTACAAAAATCTCTGCTCAGAAAAACAATACAGAGCGGGTGAACATTTTTCTAGATGAAAAATACGCCTT
TAGCGTTGATCTAGATGTGCTCGTCCAGCACGATTTGAAAAAAGGGAAAGAGCTGGACGAAGCAGATATCATCGACATTC
AATTCGGTGATGCTGTGAAAAAAGGATTTCAACAGGCCGTCGATTATTTATCCTACCGAATGAGATCGGTGAAAGAAGTA
ACCGATTATTTGACGAAAAAAGAAATCCCGGCACCTGCTATTAGTGAAATTATACACAAATTAAAGCATTACAAGTATGT
AAATGATCTTGAATTTGCGGAAGCCTATGTCAGCACCCACCGTAAAACGAACAGCAAAGGGCCGTCCGTCCTGAAAAAAG
AGCTAAAGCTCAAAGGAATAGATGATGACAACATTGAACAAGCACTATCGCAATATCCTGATGACTTACAGCTGGAGGAA
GCTGTGAAGCAGGTTCAGAAGCTTGTGAGAAAAGAAAAAAATCGTTCCGCAAAAGAGATCGAGCAGCGCATCAAGCTGCA
GCTGCAGCGAAAAGGATTTTCGTTTGGGATCATTGATAAAGCCCTTCAAGAAGCCTATGATGGACAAGAAGAGGAAAAGG
AAGAAGAAGCGCTCCTTTATATGATGGAGAAGGCAAAACGCAAGGTAGGATATGACGGATCATTTGAAAAGAAGATGAAA
GTGAAGCAATTTTTATTCAGAAAAGGCTTTGATCTCGACACAATTGATCACGTTTTAGACAAAGGGGAATGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

62.738

100

0.627