Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MK860_RS00255 Genome accession   NZ_CP092829
Coordinates   47040..47330 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus pumilus strain MS32     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 42040..52330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK860_RS00215 (MK860_00215) - 42075..42404 (+) 330 WP_012008640.1 cyclic-di-AMP receptor -
  MK860_RS00220 (MK860_00220) - 42417..42857 (+) 441 WP_044140388.1 DUF327 family protein -
  MK860_RS00225 (MK860_00225) holB 42869..43858 (+) 990 WP_065097669.1 DNA polymerase III subunit delta' -
  MK860_RS00230 (MK860_00230) - 43861..44688 (+) 828 WP_003217932.1 stage 0 sporulation family protein -
  MK860_RS00235 (MK860_00235) yabA 44703..45056 (+) 354 WP_003217957.1 DNA replication initiation control protein YabA -
  MK860_RS00240 (MK860_00240) - 45112..45855 (+) 744 WP_003217966.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  MK860_RS00245 (MK860_00245) - 45842..46138 (+) 297 WP_003217970.1 GIY-YIG nuclease family protein -
  MK860_RS00250 (MK860_00250) rsmI 46116..46994 (+) 879 WP_003217903.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  MK860_RS00255 (MK860_00255) abrB 47040..47330 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MK860_RS00260 (MK860_00260) metG 47851..49851 (+) 2001 WP_278177430.1 methionine--tRNA ligase -
  MK860_RS00265 (MK860_00265) - 49933..50700 (+) 768 WP_217013154.1 TatD family hydrolase -
  MK860_RS00270 (MK860_00270) - 50945..52147 (+) 1203 WP_034620901.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=660567 MK860_RS00255 WP_087975202.1 47040..47330(-) (abrB) [Bacillus pumilus strain MS32]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=660567 MK860_RS00255 WP_087975202.1 47040..47330(-) (abrB) [Bacillus pumilus strain MS32]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGGCGCGTGGTGATTCCAATCGAACTTCGCCGTAC
TCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938