Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MKK04_RS22520 Genome accession   NZ_CP092827
Coordinates   4875342..4876712 (-) Length   456 a.a.
NCBI ID   WP_207836540.1    Uniprot ID   -
Organism   Pseudomonas sp. LS.1a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4870342..4881712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKK04_RS22500 (MKK04_22500) - 4870568..4870765 (-) 198 WP_013974210.1 YbdD/YjiX family protein -
  MKK04_RS22505 (MKK04_22505) - 4870779..4872845 (-) 2067 WP_063913400.1 carbon starvation CstA family protein -
  MKK04_RS22510 (MKK04_22510) - 4873024..4873383 (+) 360 WP_207836536.1 PilZ domain-containing protein -
  MKK04_RS22515 (MKK04_22515) - 4873647..4875164 (+) 1518 WP_207836538.1 nucleobase:cation symporter-2 family protein -
  MKK04_RS22520 (MKK04_22520) radA 4875342..4876712 (-) 1371 WP_207836540.1 DNA repair protein RadA Machinery gene
  MKK04_RS22525 (MKK04_22525) mscL 4876890..4877309 (+) 420 WP_207836542.1 large-conductance mechanosensitive channel protein MscL -
  MKK04_RS22530 (MKK04_22530) - 4877433..4878209 (-) 777 WP_207836544.1 ferredoxin--NADP reductase -
  MKK04_RS22535 (MKK04_22535) - 4878423..4879130 (+) 708 WP_207836546.1 autoinducer binding domain-containing protein -
  MKK04_RS22540 (MKK04_22540) - 4879227..4880351 (+) 1125 WP_241106001.1 methyltransferase -
  MKK04_RS22545 (MKK04_22545) - 4880469..4880624 (-) 156 WP_085626848.1 DUF2474 domain-containing protein -
  MKK04_RS22550 (MKK04_22550) cydB 4880634..4881641 (-) 1008 WP_063913408.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48770.18 Da        Isoelectric Point: 6.8985

>NTDB_id=660532 MKK04_RS22520 WP_207836540.1 4875342..4876712(-) (radA) [Pseudomonas sp. LS.1a]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPSSGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTE
LDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVGMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETII
ATARQEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYF
EGESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHL
ANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLS
GEVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=660532 MKK04_RS22520 WP_207836540.1 4875342..4876712(-) (radA) [Pseudomonas sp. LS.1a]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACCGAGTGCGGTGCGACCTTCCCCAAATGGGCCGGCCAGTGTGGCGAATG
CGGGGCCTGGAACACTTTGGTCGAGACCATGATCGAAAGCGGCGGCGCCGCTGCGCCCAGTAGCGGCCGTGCCGGCTGGA
CCGGTCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAGGAAATCCCGCGCTTCACCACCAGCAGCACCGAA
CTGGACCGCGTGCTGGGCGGTGGCCTGGTGGATGGCTCGGTGGTGTTGATCGGTGGCGACCCCGGCATCGGCAAGTCGAC
CATCCTGCTGCAAACCTTGTGCAACATTGCCGTGGGCATGCCGGCGCTGTATGTCACCGGCGAGGAGTCGCAGCAGCAGG
TGGCCATGCGCTCGCGGCGCCTGGGCCTGCCCCAGGACCAGCTCAAGGTGATGACCGAAACCTGTATCGAGACCATCATC
GCCACGGCGCGCCAGGAAAAGCCACGGGTGATGGTAATCGACTCGATCCAGACCATTTTCACCGAGCAGCTGCAATCGGC
GCCCGGCGGCGTGGCTCAGGTACGCGAGAGCACGGCGTTGCTGGTGCGCTACGCCAAACAGAGCGGTACGGCGATTTTCC
TGGTCGGCCACGTGACCAAGGAGGGCTCGCTGGCCGGGCCACGGGTACTTGAGCACATGGTCGATACCGTGCTGTATTTC
GAGGGCGAGTCCGATGGCCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGCTTTGGCGCGGTCAACGAGCTGGGCGTGTT
CGGCATGACCGACCGTGGCCTTAAAGAAGTGTCCAATCCGTCGGCGATCTTCCTCAACCGCACCCAGGAGGAAGTGCCGG
GCAGCGTGGTGATGGCGACCTGGGAGGGCACCCGGCCGATGCTGGTTGAAGTGCAGGCGCTGGTCGACGACAGCCACCTG
GCCAACCCGCGCCGGGTGACCCTGGGCCTGGACCAGAACCGCCTTGCCATGTTGCTGGCAGTGCTGCACCGCCATGGCGG
TATTCCTACCCATGACCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTGAAGGTGCTGGAAACGGCTTCGGACCTGGCGC
TGCTGGCGGCGGTGATGTCCAGCCTGCGCAACCGTCCCCTGGCCCATGGCCTGCTGGTGTTTGGCGAGATCGGCCTGTCC
GGCGAGGTGCGGCCGGTGCCCAGTGGCCAGGAGCGCTTGAAGGAGGCGGCCAAGCACGGCTTCAAGCGGGCCATCGTGCC
CAAGGGCAATGCGCCGAAAGAGGCGCCGGCGGGGTTGCAGGTGATTGCCGTGACCCGGCTGGAGCAGGCCCTGGATGCGC
TATTTGAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(355-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.487
  radA Streptococcus pneumoniae Rx1

46.087

100

0.465
  radA Streptococcus pneumoniae D39

46.087

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.087

100

0.465
  radA Streptococcus pneumoniae R6

46.087

100

0.465
  radA Streptococcus mitis NCTC 12261

45.87

100

0.463
  radA Streptococcus mitis SK321

46.053

100

0.461