Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG458_RS13140 Genome accession   NZ_CP108435
Coordinates   3030851..3031627 (+) Length   258 a.a.
NCBI ID   WP_081219793.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01281     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3025851..3036627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG458_RS13125 (OG458_13105) - 3026023..3026556 (+) 534 WP_327408794.1 TerD family protein -
  OG458_RS13130 (OG458_13110) - 3026715..3029618 (-) 2904 WP_266617106.1 vitamin B12-dependent ribonucleotide reductase -
  OG458_RS13135 (OG458_13115) nrdR 3029781..3030332 (-) 552 WP_164375222.1 transcriptional regulator NrdR -
  OG458_RS13140 (OG458_13120) dinR/lexA 3030851..3031627 (+) 777 WP_081219793.1 transcriptional repressor LexA Regulator
  OG458_RS13145 (OG458_13125) - 3031851..3033917 (-) 2067 WP_239155826.1 ATP-dependent DNA helicase -
  OG458_RS13150 (OG458_13130) - 3034108..3034815 (-) 708 WP_327410996.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 27949.65 Da        Isoelectric Point: 7.4755

>NTDB_id=660484 OG458_RS13140 WP_081219793.1 3030851..3031627(+) (dinR/lexA) [Streptomyces sp. NBC_01281]
MTTTADSATITAQDRSQGRLEPVHAMNEAANHEGPKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQSSVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDV
FPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNSAYQPI
PGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 777 bp        

>NTDB_id=660484 OG458_RS13140 WP_081219793.1 3030851..3031627(+) (dinR/lexA) [Streptomyces sp. NBC_01281]
GTGACCACCACCGCAGACAGCGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCGCGAATCATGAGGGGCCCAAGCGCTCCCTGCCTGGGCGACCTCCAGGCATCCGAGCCGACAGCTCGGGACTCA
CGGACCGGCAACGCCGGGTGATCGAGGTGATCCGGGACTCCGTGCAGCGGCGCGGTTACCCGCCGTCGATGCGGGAGATC
GGACAGGCCGTCGGCCTTTCCAGCACCTCCTCGGTCGCGCATCAGCTCATGGCACTGGAGCGCAAGGGTTTCCTTCGCCG
GGACCCGCACCGCCCGCGCGCCTACGAGGTGCGGGGCTCCGACCAGTCGTCGGTGCAGCCCACGGACACGGCGGGCAAGC
CGGCCGCGTCGTACGTACCGCTCGTCGGCCGGATCGCCGCCGGCGGCCCGATCCTCGCCGAGGAGTCGGTCGAGGACGTG
TTCCCGCTCCCCCGCCAGCTGGTGGGCGACGGTGAGCTGTTCGTCCTGAAGGTCGTCGGAGACTCGATGATCGAAGCCGC
CATCTGTGACGGGGACTGGGTGACGGTCCGCCGCCAGCCGGTCGCCGAGAACGGCGACATCGTCGCCGCGATGCTGGACG
GCGAGGCCACGGTGAAGCGCTTCAAGCGGGAGGACGGCCACGTCTGGCTGCTGCCGCACAACTCCGCCTACCAGCCGATC
CCCGGCGACGAGGCGACCATCCTCGGCAAGGTCGTCGCGGTACTGCGCCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(140-252)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.714

81.395

0.372