Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   MK848_RS21025 Genome accession   NZ_CP092824
Coordinates   4074319..4074783 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain S1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 4069319..4079783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK848_RS21005 (MK848_20955) kinA 4069786..4071606 (+) 1821 WP_015252197.1 sporulation histidine kinase KinA -
  MK848_RS21010 (MK848_20960) dapX 4071616..4072797 (-) 1182 WP_014476653.1 aminotransferase A -
  MK848_RS21015 (MK848_20965) - 4072999..4073160 (-) 162 WP_003245246.1 hypothetical protein -
  MK848_RS21020 (MK848_20970) cheV 4073364..4074275 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  MK848_RS21025 (MK848_20975) kre 4074319..4074783 (-) 465 WP_003232406.1 YkyB family protein Regulator
  MK848_RS21030 (MK848_20980) ykuC 4074909..4076201 (-) 1293 WP_029727007.1 MFS transporter -
  MK848_RS21035 (MK848_20985) ltdD 4076277..4076771 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  MK848_RS21040 (MK848_20990) ppeE 4076823..4077686 (-) 864 WP_029727008.1 metallophosphoesterase -
  MK848_RS21045 (MK848_20995) fadH 4077829..4078593 (+) 765 WP_029317730.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=660476 MK848_RS21025 WP_003232406.1 4074319..4074783(-) (kre) [Bacillus subtilis strain S1]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=660476 MK848_RS21025 WP_003232406.1 4074319..4074783(-) (kre) [Bacillus subtilis strain S1]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1