Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG458_RS05700 Genome accession   NZ_CP108435
Coordinates   1296814..1297830 (-) Length   338 a.a.
NCBI ID   WP_327408141.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01281     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1291814..1302830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG458_RS05685 (OG458_05680) - 1292773..1293549 (-) 777 WP_266850582.1 ATP-binding cassette domain-containing protein -
  OG458_RS05690 (OG458_05685) - 1293662..1294777 (-) 1116 WP_327408139.1 substrate-binding domain-containing protein -
  OG458_RS05695 (OG458_05690) - 1295474..1296460 (-) 987 WP_327408140.1 TDT family transporter -
  OG458_RS05700 (OG458_05695) cytR 1296814..1297830 (-) 1017 WP_327408141.1 LacI family DNA-binding transcriptional regulator Regulator
  OG458_RS05705 (OG458_05700) - 1298116..1299429 (+) 1314 WP_164372322.1 extracellular solute-binding protein -
  OG458_RS05710 (OG458_05705) - 1299592..1300539 (+) 948 WP_266620383.1 sugar ABC transporter permease -
  OG458_RS05715 (OG458_05710) - 1300553..1301494 (+) 942 WP_266618199.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 36123.87 Da        Isoelectric Point: 5.4688

>NTDB_id=660473 OG458_RS05700 WP_327408141.1 1296814..1297830(-) (cytR) [Streptomyces sp. NBC_01281]
MGGRQRPTIKTVAARAGVGRTTVSRVINGSELVSEKARAAVLAAIAELNYVPNSVARGLVTSRTNSVALVIPESESRLGS
EPYFSAVIRGVSTALAETRTQLQLVLVRDQAERDQLTESVAERRVDGVLLVSVHEHDPLPGLLEDMGLPTVLAGRRSPEE
SLSHVHSDNAGGAAAAVEHLLGRGRRTIGTISGPLDMDVARSRLQGWRETLEKAGREVPEGLVASSDFTEEGGGAAMRSL
LEQVPTLDAVFVASDVMAAGALAELRRQGRRVPDDVAVVGFDDSIIARHTHPPLTSVRQPVEEIGSTIARILLAEIDDPE
EPRRHIVLPTELVVRESS

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=660473 OG458_RS05700 WP_327408141.1 1296814..1297830(-) (cytR) [Streptomyces sp. NBC_01281]
ATGGGGGGCAGGCAACGCCCGACCATCAAGACCGTGGCCGCCCGCGCCGGCGTCGGACGCACCACGGTTTCACGAGTCAT
CAACGGCTCCGAACTCGTCAGCGAGAAGGCGAGGGCCGCCGTGCTCGCCGCCATCGCCGAACTGAACTACGTCCCGAACT
CGGTCGCCCGGGGACTGGTGACGAGCCGGACCAACTCCGTTGCCCTGGTCATTCCCGAGTCGGAGAGCCGACTGGGCTCC
GAGCCCTACTTCTCGGCAGTCATCCGCGGGGTCAGCACCGCGCTGGCGGAGACCCGGACGCAACTGCAACTCGTCCTCGT
ACGCGATCAGGCCGAACGGGACCAGCTCACCGAGTCGGTGGCCGAGCGACGGGTGGACGGTGTACTCCTCGTCTCGGTGC
ACGAACACGATCCGCTGCCGGGGCTGCTGGAGGACATGGGCCTGCCCACGGTGCTCGCCGGGCGCCGTTCGCCCGAGGAG
TCGCTCAGCCACGTGCACTCCGACAACGCGGGCGGAGCCGCGGCCGCCGTCGAGCACCTGCTCGGCCGGGGACGCCGGAC
GATCGGCACGATCAGCGGGCCCCTGGACATGGACGTGGCCCGTAGCCGGCTCCAGGGGTGGCGCGAAACCCTCGAGAAGG
CGGGCCGCGAGGTCCCCGAAGGGCTCGTGGCCTCCTCCGACTTCACCGAGGAGGGCGGCGGGGCCGCCATGCGCTCACTC
CTCGAACAAGTCCCCACGCTCGACGCCGTGTTCGTCGCCTCGGACGTCATGGCTGCGGGTGCGCTCGCGGAGCTGCGCCG
ACAGGGGCGGCGCGTTCCCGACGACGTCGCGGTGGTCGGGTTCGACGACTCCATCATCGCCAGGCACACCCACCCGCCCC
TCACCAGCGTGCGTCAGCCGGTCGAAGAGATCGGCAGCACGATCGCCCGCATTCTGCTGGCGGAGATCGATGACCCCGAG
GAGCCTCGCCGGCACATCGTCCTTCCCACGGAGCTGGTGGTGCGGGAGTCGTCCTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(177-338)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.86

100

0.364
  cytR Vibrio parahaemolyticus RIMD 2210633

35.569

100

0.361