Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   MK848_RS19075 Genome accession   NZ_CP092824
Coordinates   3715653..3716231 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain S1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3710653..3721231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK848_RS19050 - 3711164..3711679 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  MK848_RS19055 - 3711920..3712546 (-) 627 Protein_3690 protoglobin domain-containing protein -
  MK848_RS19060 (MK848_19020) comW 3712601..3714130 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  MK848_RS19065 (MK848_19025) yhxC 3714242..3715099 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  MK848_RS19070 (MK848_19030) yhzC 3715127..3715360 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  MK848_RS19075 (MK848_19035) comK 3715653..3716231 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  MK848_RS19080 (MK848_19040) yhxD 3716278..3717177 (-) 900 WP_101172512.1 SDR family oxidoreductase -
  MK848_RS19085 (MK848_19045) yhjA 3717394..3717663 (+) 270 WP_017695342.1 excalibur calcium-binding domain-containing protein -
  MK848_RS19090 (MK848_19050) yhjB 3717707..3719176 (-) 1470 WP_003233134.1 sodium:solute symporter -
  MK848_RS19095 (MK848_19055) yhjC 3719173..3719373 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  MK848_RS19100 (MK848_19060) - 3719572..3719943 (-) 372 WP_014476361.1 hypothetical protein -
  MK848_RS19105 (MK848_19065) yhjE 3720095..3720718 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  MK848_RS19110 (MK848_19070) lepB 3720720..3721226 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=660464 MK848_RS19075 WP_029317573.1 3715653..3716231(+) (comK) [Bacillus subtilis strain S1]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=660464 MK848_RS19075 WP_029317573.1 3715653..3716231(+) (comK) [Bacillus subtilis strain S1]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995