Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MK848_RS13630 Genome accession   NZ_CP092824
Coordinates   2670199..2670489 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain S1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2665199..2675489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK848_RS13590 (MK848_13570) darA 2665222..2665551 (+) 330 WP_003242755.1 cyclic di-AMP receptor DarA -
  MK848_RS13595 (MK848_13575) yaaR 2665564..2666004 (+) 441 WP_009966249.1 YaaR family protein -
  MK848_RS13600 (MK848_13580) holB 2666016..2667005 (+) 990 WP_003244417.1 DNA polymerase III subunit delta' -
  MK848_RS13605 (MK848_13585) ricT 2667008..2667835 (+) 828 WP_003243571.1 competence/sporulation regulator complex protein RicT -
  MK848_RS13610 (MK848_13590) yabA 2667850..2668209 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  MK848_RS13615 (MK848_13595) trmNF 2668268..2669011 (+) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  MK848_RS13620 (MK848_13600) yazA 2668998..2669297 (+) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  MK848_RS13625 (MK848_13605) rsmI 2669272..2670150 (+) 879 WP_019712967.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  MK848_RS13630 (MK848_13610) abrB 2670199..2670489 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  MK848_RS13635 (MK848_13615) metG 2670984..2672978 (+) 1995 WP_014662479.1 methionine--tRNA ligase -
  MK848_RS13640 (MK848_13620) dayD 2673058..2673825 (+) 768 WP_029726393.1 TatD family hydrolase -
  MK848_RS13645 (MK848_13625) yabE 2673981..2675294 (+) 1314 WP_029726392.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=660448 MK848_RS13630 WP_003226760.1 2670199..2670489(-) (abrB) [Bacillus subtilis strain S1]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=660448 MK848_RS13630 WP_003226760.1 2670199..2670489(-) (abrB) [Bacillus subtilis strain S1]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1