Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG194_RS26905 Genome accession   NZ_CP108427
Coordinates   5956581..5957579 (+) Length   332 a.a.
NCBI ID   WP_327403364.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01288     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5951581..5962579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG194_RS26880 (OG194_26860) - 5951978..5952622 (+) 645 WP_327403359.1 TetR/AcrR family transcriptional regulator -
  OG194_RS26885 (OG194_26865) - 5952762..5954321 (+) 1560 WP_327403360.1 MFS transporter -
  OG194_RS26890 (OG194_26870) - 5954433..5954960 (-) 528 WP_327403361.1 MarR family transcriptional regulator -
  OG194_RS26895 (OG194_26875) - 5955058..5955861 (+) 804 WP_327403362.1 class III extradiol ring-cleavage dioxygenase -
  OG194_RS26900 (OG194_26880) - 5955867..5956397 (-) 531 WP_327403363.1 N-acetyltransferase family protein -
  OG194_RS26905 (OG194_26885) rpoS 5956581..5957579 (+) 999 WP_327403364.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG194_RS26910 (OG194_26890) - 5958122..5958778 (+) 657 WP_327407218.1 TetR family transcriptional regulator -
  OG194_RS26915 (OG194_26895) - 5958804..5959784 (-) 981 WP_327403365.1 YafY family protein -
  OG194_RS26920 (OG194_26900) - 5959847..5961355 (+) 1509 WP_327403366.1 MFS transporter -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37193.98 Da        Isoelectric Point: 5.5872

>NTDB_id=660426 OG194_RS26905 WP_327403364.1 5956581..5957579(+) (rpoS) [Streptomyces sp. NBC_01288]
MATRAVARRKSASGETSGVARSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQVLEGEEKSQAD
ASRAELEALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNRKNGREPEHAEIAAELESTPERVTNVLDWARDPVSLNMSVDDDGDTQF
GDLLEDTSAVSPEQSVMTLLRSEELDDLIGRLDQRTASIIKMRYGMEDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLASQTGFDAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=660426 OG194_RS26905 WP_327403364.1 5956581..5957579(+) (rpoS) [Streptomyces sp. NBC_01288]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCTCCGGCGAGACCTCCGGCGTGGCGCGCAGTGTTCGCGCCCATGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTATCTCGACGAAATCGCGCGCACACCGCTGCTCGACGCCGCCAAGG
AAGTCGAGCTTTCGCAGACCATCGAAGCGGGCGTGTTCGCGCGCCAGGTCCTTGAGGGCGAGGAGAAGTCCCAGGCGGAC
GCCTCCCGAGCCGAACTCGAGGCCCTGGTCGCCGAAGGGGAGCGTGCCAAGGACGTCTTCATCCGTTCCAACCTCCGCCT
GGTCGTGGCCGTGGCCCGCCGTTACCCCCGTAGCGGCCTGCCCCTCCTCGATCTGATCCAGGAGGGCAACGCGGGCCTGG
TGCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGCCAGGCCATC
ACCCGCTCCATCGCCGACCAGTCCCGGACCATCCGCCTGCCCGTCCACCTCGTGGAGGAGCTGGGCCGGATCCGCCGGGT
GCAGCGCGAGTTCAACCGCAAGAACGGGCGGGAGCCCGAACACGCGGAGATCGCCGCCGAGTTGGAGTCGACCCCGGAGC
GCGTGACGAACGTCCTGGACTGGGCCCGAGACCCGGTCTCGCTGAACATGTCGGTGGACGACGACGGCGACACGCAGTTC
GGTGACCTCCTGGAGGACACCTCCGCGGTCTCGCCCGAGCAGTCCGTCATGACCCTGTTGCGCAGCGAGGAACTGGACGA
CCTGATCGGCCGCCTCGACCAGCGCACGGCCTCCATCATCAAGATGCGGTACGGCATGGAGGACGGCCGGGAGCGCACGC
TCACCGAGGTCGGCAAGGAGCACGGCCTGACGCGCGAGCGCATCCGCCAGATCGAGAAGCACGCACTGCTGGAACTGAAG
AAGCTGGCCAGCCAGACCGGCTTCGACGCGGCGGCCTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 region 3 (Sigma70_r3)

(179-255)

Sigma-70 region 2 (Sigma70_r2)

(100-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.134

90.06

0.361