Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MK848_RS04900 Genome accession   NZ_CP092824
Coordinates   992485..993252 (-) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis strain S1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 987485..998252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK848_RS04880 (MK848_04885) ppsR 987659..988471 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  MK848_RS04885 (MK848_04890) ccpN 988497..989135 (-) 639 WP_119900122.1 transcriptional regulator CcpN -
  MK848_RS04890 (MK848_04895) glyS 989268..991307 (-) 2040 WP_372374315.1 glycine--tRNA ligase subunit beta -
  MK848_RS04895 (MK848_04900) glyQ 991300..992187 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  MK848_RS04900 (MK848_04905) recO 992485..993252 (-) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  MK848_RS04905 (MK848_04910) yqzL 993289..993432 (-) 144 WP_003230053.1 YqzL family protein -
  MK848_RS04910 (MK848_04915) era 993580..994485 (-) 906 WP_003230051.1 GTPase Era -
  MK848_RS04915 (MK848_04920) - 994466..994876 (-) 411 WP_003230049.1 cytidine deaminase -
  MK848_RS04920 (MK848_04925) unpK 994995..995366 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  MK848_RS04925 (MK848_04930) ybeY 995347..995820 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  MK848_RS04930 (MK848_04935) pgpH 995821..997956 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=660416 MK848_RS04900 WP_003230055.1 992485..993252(-) (recO) [Bacillus subtilis strain S1]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=660416 MK848_RS04900 WP_003230055.1 992485..993252(-) (recO) [Bacillus subtilis strain S1]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1