Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   MK848_RS04370 Genome accession   NZ_CP092824
Coordinates   902589..903392 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain S1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 897589..908392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK848_RS04345 (MK848_04350) glpQB 898727..899458 (-) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -
  MK848_RS04350 (MK848_04355) yqiI 899537..900157 (-) 621 WP_080276607.1 N-acetylmuramoyl-L-alanine amidase -
  MK848_RS04355 (MK848_04360) - 900177..900473 (-) 297 WP_014480225.1 hypothetical protein -
  MK848_RS04360 (MK848_04365) - 900781..900933 (+) 153 WP_014480226.1 hypothetical protein -
  MK848_RS04365 (MK848_04370) yqiG 901006..902124 (+) 1119 WP_032730375.1 NADH-dependent flavin oxidoreductase -
  MK848_RS04370 (MK848_04375) spo0A 902589..903392 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  MK848_RS04375 (MK848_04380) spoIVB 903668..904948 (-) 1281 WP_014480228.1 SpoIVB peptidase -
  MK848_RS04380 (MK848_04385) recN 905123..906853 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  MK848_RS04385 (MK848_04390) argR 906890..907339 (-) 450 WP_003230265.1 arginine repressor ArgR -
  MK848_RS04390 (MK848_04395) yqxC 907437..908282 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=660405 MK848_RS04370 WP_003226427.1 902589..903392(-) (spo0A) [Bacillus subtilis strain S1]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=660405 MK848_RS04370 WP_003226427.1 902589..903392(-) (spo0A) [Bacillus subtilis strain S1]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATAATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAGTTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1