Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MK848_RS03385 Genome accession   NZ_CP092824
Coordinates   725331..725951 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain S1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 720331..730951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK848_RS03345 (MK848_03350) ptsA 721462..721968 (-) 507 WP_029317998.1 PTS glucose transporter subunit IIA -
  MK848_RS03350 (MK848_03355) ypqA 722106..722525 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  MK848_RS03355 (MK848_03360) sppG 722546..722923 (-) 378 WP_004398696.1 YppG family protein -
  MK848_RS03360 (MK848_03365) yppF 723111..723299 (+) 189 WP_003230690.1 YppF family protein -
  MK848_RS03365 (MK848_03370) yppE 723338..723709 (-) 372 WP_015714151.1 YppE family protein -
  MK848_RS03370 (MK848_03375) yppD 723755..724000 (-) 246 WP_015251831.1 YppD family protein -
  MK848_RS03375 (MK848_03380) sspM 724199..724303 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  MK848_RS03380 (MK848_03385) yppC 724328..725290 (-) 963 WP_032729081.1 DUF2515 domain-containing protein -
  MK848_RS03385 (MK848_03390) recU 725331..725951 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  MK848_RS03390 (MK848_03395) ponA 725973..728726 (+) 2754 WP_029317996.1 transglycosylase domain-containing protein -
  MK848_RS03395 (MK848_03400) ypoC 728802..729296 (-) 495 WP_009967579.1 YpoC family protein -
  MK848_RS03400 (MK848_03405) nth 729293..729952 (-) 660 WP_009967580.1 endonuclease III -
  MK848_RS03405 (MK848_03410) dnaD 729971..730669 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=660404 MK848_RS03385 WP_004399067.1 725331..725951(+) (recU) [Bacillus subtilis strain S1]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=660404 MK848_RS03385 WP_004399067.1 725331..725951(+) (recU) [Bacillus subtilis strain S1]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGATTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1