Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MK848_RS00170 Genome accession   NZ_CP092824
Coordinates   30820..31098 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain S1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 25820..36098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK848_RS00150 (MK848_00150) panEB 27008..27919 (+) 912 WP_029317745.1 ketopantoate reductase family protein -
  MK848_RS00155 (MK848_00155) ampS 27953..29185 (-) 1233 WP_003232341.1 aminopeptidase -
  MK848_RS00160 (MK848_00160) ykpC 29294..29428 (-) 135 WP_003238865.1 protein YkpC -
  MK848_RS00165 (MK848_00165) mreBH 29529..30536 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  MK848_RS00170 (MK848_00170) abrB 30820..31098 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  MK848_RS00175 (MK848_00175) kinC 31288..32574 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  MK848_RS00180 (MK848_00180) ykqA 32590..33417 (+) 828 WP_029317746.1 gamma-glutamylcyclotransferase -
  MK848_RS00185 (MK848_00185) ktrC 33480..34145 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  MK848_RS00190 (MK848_00190) ade 34301..36037 (+) 1737 WP_029317747.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=660399 MK848_RS00170 WP_003244728.1 30820..31098(+) (abrB) [Bacillus subtilis strain S1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=660399 MK848_RS00170 WP_003244728.1 30820..31098(+) (abrB) [Bacillus subtilis strain S1]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576