Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   MK848_RS00050 Genome accession   NZ_CP092824
Coordinates   6748..7323 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain S1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1748..12323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK848_RS00020 (MK848_00020) dapD 1936..2646 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  MK848_RS00025 (MK848_00025) dapI 2716..3840 (+) 1125 WP_038428899.1 N-acetyldiaminopimelate deacetylase -
  MK848_RS00030 (MK848_00030) ykuS 3902..4147 (+) 246 WP_003232382.1 YkuS family protein -
  MK848_RS00035 (MK848_00035) mscT 4184..4987 (-) 804 WP_029317733.1 small-conductance mechanosensitive channel protein MscT -
  MK848_RS00040 (MK848_00040) ahpA 5224..5766 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  MK848_RS00045 (MK848_00045) ykuV 5836..6282 (+) 447 WP_015252187.1 thiol-disulfide oxidoreductase YkuV -
  MK848_RS00050 (MK848_00050) rok 6748..7323 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  MK848_RS00055 (MK848_00055) cse15 7364..8329 (-) 966 WP_029317734.1 spore protein Cse15 -
  MK848_RS00060 (MK848_00060) mobA 8466..9065 (+) 600 WP_014479670.1 molybdenum cofactor guanylyltransferase -
  MK848_RS00065 (MK848_00065) moeB 9116..10135 (+) 1020 WP_029317735.1 molybdopterin-synthase adenylyltransferase MoeB -
  MK848_RS00070 (MK848_00070) glp 10153..11445 (+) 1293 WP_029317736.1 gephyrin-like molybdotransferase Glp -
  MK848_RS00075 (MK848_00075) mobB 11406..11927 (+) 522 WP_015252182.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=660398 MK848_RS00050 WP_003232378.1 6748..7323(+) (rok) [Bacillus subtilis strain S1]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=660398 MK848_RS00050 WP_003232378.1 6748..7323(+) (rok) [Bacillus subtilis strain S1]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1