Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MJT43_RS07815 Genome accession   NZ_CP092823
Coordinates   1472652..1474028 (-) Length   458 a.a.
NCBI ID   WP_215430698.1    Uniprot ID   -
Organism   Lactobacillus delbrueckii strain DPUL-F36     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1467652..1479028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJT43_RS07795 (MJT43_07695) - 1470172..1470687 (-) 516 WP_305033891.1 hypothetical protein -
  MJT43_RS07800 (MJT43_07700) - 1470697..1471047 (-) 351 WP_305033892.1 EAL domain-containing protein -
  MJT43_RS07805 (MJT43_07705) - 1471131..1471448 (-) 318 WP_231546610.1 EAL domain-containing protein -
  MJT43_RS07810 (MJT43_07710) - 1471595..1472542 (-) 948 WP_215461311.1 glycosyltransferase family 8 protein -
  MJT43_RS07815 (MJT43_07715) radA 1472652..1474028 (-) 1377 WP_215430698.1 DNA repair protein RadA Machinery gene
  MJT43_RS07820 (MJT43_07720) - 1474028..1474582 (-) 555 WP_077301530.1 dUTP diphosphatase -
  MJT43_RS07825 (MJT43_07725) - 1474688..1474975 (+) 288 WP_003618267.1 hypothetical protein -
  MJT43_RS07830 (MJT43_07730) pepC 1475060..1476409 (+) 1350 WP_077301527.1 aminopeptidase C -
  MJT43_RS07835 (MJT43_07735) - 1476475..1476768 (-) 294 WP_002879759.1 hypothetical protein -
  MJT43_RS07840 (MJT43_07740) - 1476762..1477697 (-) 936 WP_011544168.1 AAA family ATPase -
  MJT43_RS07845 (MJT43_07745) fabZ 1477810..1478271 (-) 462 WP_003618306.1 3-hydroxyacyl-ACP dehydratase FabZ -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50053.51 Da        Isoelectric Point: 6.6143

>NTDB_id=660395 MJT43_RS07815 WP_215430698.1 1472652..1474028(-) (radA) [Lactobacillus delbrueckii strain DPUL-F36]
MARARTQYKCRSCGYISASYLGRCPNCGAWNQFEKESQEVRQTSTKATPSRLMASVGAKEAVKMSTVKAEKEERVLTKSS
ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQIMSELAEKYKVLYVSGEESASQIKLRADRLGLGQSPMLLYPESNMEHI
RDQIDDVKPDFVVIDSIQTMNEPSLDSMVGSASQVREVTAELMKIAKLDQVTVFVIGHVTKEGSIAGPKILEHMVDTVLY
FEGDEHHAYRILHSVKNRFGAANEIGMFEMKTEGLAEVTNPSAVFLDERLPDSTGSAVVVSLEGTRPILGEIQALVTPTA
FGYAKRTTSGLDYNRVSLLLAVLEKRGNLMLQNQDAYLSATGGIRLNEPAIDLAISMAIASSYYDKEISATDCFVGEIGL
TGEVRRVNQIQARVKEAGKVGFKRIFIPKYNMSPALQDLGIEVIPVSSVRQALHYLFS

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=660395 MJT43_RS07815 WP_215430698.1 1472652..1474028(-) (radA) [Lactobacillus delbrueckii strain DPUL-F36]
ATGGCCAGAGCTAGAACCCAGTATAAGTGCCGGTCTTGCGGCTACATCTCCGCTTCTTACCTGGGCCGGTGCCCGAACTG
CGGGGCCTGGAACCAGTTTGAAAAAGAAAGCCAGGAGGTCCGCCAGACTTCTACTAAAGCTACCCCCAGCCGCCTGATGG
CCAGCGTGGGTGCTAAAGAAGCCGTTAAAATGTCCACCGTCAAGGCGGAAAAAGAAGAGCGGGTCTTAACCAAGTCCTCT
GAACTTAACCGGGTCTTAGGCGGCGGGATCGTACCAGGCTCTTTGGTCTTGATTGGCGGGGACCCCGGCATCGGCAAGTC
CACTTTGATGCTGCAGATCATGAGCGAACTGGCCGAAAAATACAAGGTCCTCTACGTCTCCGGGGAAGAATCTGCCAGCC
AGATCAAGCTGCGGGCTGACCGCTTAGGCCTGGGCCAAAGCCCCATGCTTTTATATCCGGAAAGCAACATGGAACACATC
CGCGACCAGATCGACGACGTTAAGCCAGATTTTGTCGTGATCGACTCCATCCAGACCATGAATGAACCCAGCCTGGACTC
CATGGTGGGCTCAGCTTCCCAGGTCCGGGAAGTTACCGCCGAATTGATGAAGATCGCCAAGCTGGACCAGGTCACTGTCT
TTGTCATCGGCCACGTGACCAAGGAAGGGTCCATCGCCGGGCCGAAAATCCTGGAGCACATGGTTGACACCGTCCTTTAC
TTTGAAGGTGACGAGCACCATGCCTACCGGATCCTGCACTCAGTCAAGAACCGTTTTGGGGCGGCCAACGAAATCGGCAT
GTTTGAAATGAAGACCGAAGGCCTGGCAGAAGTGACCAATCCTTCCGCTGTCTTCTTAGATGAACGCTTGCCCGACTCAA
CTGGGTCAGCCGTGGTCGTTTCTTTAGAAGGCACCCGGCCGATCTTGGGCGAAATCCAGGCCCTGGTCACCCCAACCGCC
TTCGGCTATGCCAAGCGGACTACTTCGGGCCTGGACTACAACCGGGTCTCCCTGCTTTTAGCCGTTTTGGAAAAAAGGGG
GAACCTAATGTTGCAGAACCAGGACGCCTATTTATCAGCGACCGGCGGCATCCGCTTAAACGAACCGGCCATTGACCTGG
CCATCTCCATGGCCATTGCCTCCAGTTACTATGACAAGGAAATCTCCGCGACTGACTGCTTTGTCGGGGAAATCGGCCTG
ACTGGGGAAGTCCGCCGGGTCAACCAGATCCAGGCCCGGGTCAAGGAAGCCGGCAAGGTTGGCTTCAAGCGGATTTTTAT
CCCGAAATACAATATGAGCCCGGCCTTGCAGGATTTGGGGATTGAGGTAATTCCGGTCTCCAGCGTCCGCCAGGCCCTCC
ACTACCTTTTCTCATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

56.114

100

0.561
  radA Streptococcus mitis NCTC 12261

56.114

100

0.561
  radA Streptococcus pneumoniae Rx1

56.114

100

0.561
  radA Streptococcus pneumoniae D39

56.114

100

0.561
  radA Streptococcus pneumoniae R6

56.114

100

0.561
  radA Streptococcus pneumoniae TIGR4

56.114

100

0.561
  radA Bacillus subtilis subsp. subtilis str. 168

55.604

99.345

0.552