Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG194_RS11875 Genome accession   NZ_CP108427
Coordinates   2778241..2779020 (+) Length   259 a.a.
NCBI ID   WP_026151025.1    Uniprot ID   A0ABU4FGW0
Organism   Streptomyces sp. NBC_01288     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2773241..2784020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG194_RS11865 (OG194_11855) - 2774059..2776959 (-) 2901 WP_327400838.1 vitamin B12-dependent ribonucleotide reductase -
  OG194_RS11870 (OG194_11860) nrdR 2777124..2777675 (-) 552 WP_327400839.1 transcriptional regulator NrdR -
  OG194_RS11875 (OG194_11865) dinR/lexA 2778241..2779020 (+) 780 WP_026151025.1 transcriptional repressor LexA Regulator
  OG194_RS11880 (OG194_11870) - 2779191..2781173 (-) 1983 WP_327400840.1 ATP-dependent DNA helicase -
  OG194_RS11885 (OG194_11875) - 2781684..2782607 (-) 924 WP_327400841.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28037.72 Da        Isoelectric Point: 7.0668

>NTDB_id=660388 OG194_RS11875 WP_026151025.1 2778241..2779020(+) (dinR/lexA) [Streptomyces sp. NBC_01288]
MTTTADSATITAQDRSQGRLEPVHAMNEAANPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQSSSVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHNSAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=660388 OG194_RS11875 WP_026151025.1 2778241..2779020(+) (dinR/lexA) [Streptomyces sp. NBC_01288]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGATCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCAATGAA
CGAAGCCGCGAATCCCGAGGGACACAAGCGTTCCCTGCCGGGCCGACCTCCCGGTATCCGGGCGGACAGCTCGGGGCTCA
CGGACCGGCAGCGCCGGGTGATCGAGGTCATCAGGGACTCGGTGCAGCGACGGGGCTACCCGCCGTCGATGCGCGAGATC
GGCCAGGCCGTGGGCCTGTCCAGCACATCCTCGGTCGCACACCAGCTGATGGCACTGGAGCGCAAGGGCTTCCTACGCCG
CGACCCGCACCGCCCGCGCGCGTACGAGGTCCGCGGCAGCGACCAGTCCTCGTCGGTGCAGCCCACGGACACCGCGGGCA
AGCCCGCCGCGTCGTACGTCCCCTTGGTGGGCCGGATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAATCGGTCGAGGAC
GTCTTCCCCCTCCCCCGCCAACTGGTCGGTGACGGTGAGCTGTTCGTCCTCAAGGTCGTCGGTGACTCGATGATCGAGGC
CGCGATCTGCGACGGCGACTGGGTCACCGTGCGCCGCCAGCCGGTCGCCGAGAACGGTGACATCGTGGCCGCCATGCTGG
AGGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTCCTCCCGCACAACTCGGCCTACGAGCCG
ATCCCCGGCGACGACGCGACGATCCTCGGCAAGGTGGTGGCAGTGCTGCGGCGCGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375