Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MH928_RS04610 Genome accession   NZ_CP092822
Coordinates   1072431..1073795 (-) Length   454 a.a.
NCBI ID   WP_182493265.1    Uniprot ID   -
Organism   Flavobacterium sp. WW92     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1067431..1078795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MH928_RS04595 (MH928_04595) - 1067793..1069613 (+) 1821 WP_264528488.1 histidine kinase -
  MH928_RS04600 (MH928_04600) - 1069613..1070365 (+) 753 WP_264528489.1 LytTR family DNA-binding domain-containing protein -
  MH928_RS04605 (MH928_04605) - 1070366..1072336 (-) 1971 WP_264528490.1 transglycosylase domain-containing protein -
  MH928_RS04610 (MH928_04610) radA 1072431..1073795 (-) 1365 WP_182493265.1 DNA repair protein RadA Machinery gene
  MH928_RS04615 (MH928_04615) - 1073800..1074942 (-) 1143 WP_121375873.1 alpha/beta hydrolase-fold protein -
  MH928_RS04620 (MH928_04620) - 1075009..1075971 (-) 963 WP_264528491.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  MH928_RS04625 (MH928_04625) panD 1075979..1076329 (-) 351 WP_121375875.1 aspartate 1-decarboxylase -
  MH928_RS04630 (MH928_04630) panC 1076350..1077198 (-) 849 WP_264528492.1 pantoate--beta-alanine ligase -
  MH928_RS04635 (MH928_04635) - 1077305..1078111 (+) 807 WP_121376267.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 50366.86 Da        Isoelectric Point: 6.2776

>NTDB_id=660378 MH928_RS04610 WP_182493265.1 1072431..1073795(-) (radA) [Flavobacterium sp. WW92]
MSKIKTTFFCQNCGAQYSKWQGQCNSCKEWNTIAEEIIQKEDKKDWKSTPSPDSKRVTKPLKIHEIDSTEEVRMDTRDGE
LNRVLGGGIVPGSLILLGGEPGIGKSTLLLQISLKLPYRTLYVSGEESQKQIKMRAERINPLSDNCYILTETKTQNIFKQ
IEAIEPEIVIIDSIQTLHTDYIESSAGSISQIRETTAELIKFAKETNIPVILIGHITKDGNIAGPKILEHMVDTVLQFEG
DRNHIYRILRSLKNRFGSTAELGIYEMQGSGLREVSNPSEILISHKEEELSGTAIATTLEGMRPLMIEIQALVSTAVYGT
PQRSTTGYNAKRLNMILAVLEKRAGFRLGAKDVFLNVTGGISVDDPAIDLAVVAAILSSNEDIPVGKDFCFAGEVGLSGE
IRPVNRVDQRIQEAEKLGFSTIFVSKYNKITLKNTFIKIRLVSKIEDVVSELFG

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=660378 MH928_RS04610 WP_182493265.1 1072431..1073795(-) (radA) [Flavobacterium sp. WW92]
ATGTCAAAAATAAAAACGACTTTTTTCTGCCAAAACTGCGGCGCCCAATATTCGAAGTGGCAAGGCCAATGCAATTCCTG
CAAGGAATGGAATACGATTGCCGAAGAAATAATCCAAAAAGAAGACAAGAAAGATTGGAAAAGCACGCCTTCGCCTGATT
CAAAAAGAGTTACGAAGCCGTTAAAAATCCATGAAATCGACAGCACCGAAGAAGTCCGCATGGACACTAGAGACGGAGAA
TTAAACCGTGTTCTAGGCGGCGGTATTGTTCCTGGCTCTTTAATTCTTTTAGGAGGCGAACCTGGTATTGGAAAAAGTAC
GTTGCTTTTGCAAATTTCTCTAAAATTACCTTATCGAACGTTGTACGTTTCCGGCGAAGAAAGCCAGAAGCAGATAAAAA
TGCGTGCCGAAAGAATCAATCCGTTAAGCGACAACTGCTATATCCTTACCGAAACAAAAACGCAAAATATTTTCAAGCAG
ATTGAAGCCATCGAGCCAGAAATCGTCATTATCGATTCCATACAAACGCTTCATACCGATTATATTGAGTCTTCTGCTGG
AAGCATTTCACAGATTCGGGAAACCACTGCCGAACTGATCAAATTTGCCAAAGAAACCAATATTCCGGTCATCTTGATCG
GACATATTACGAAAGACGGAAACATCGCTGGACCGAAAATCCTAGAACATATGGTTGATACTGTCTTGCAGTTTGAAGGC
GACAGAAATCATATCTACAGAATCTTGCGTTCGCTTAAAAACCGTTTCGGTTCTACGGCAGAATTAGGAATCTACGAAAT
GCAAGGCTCCGGCTTAAGGGAGGTCTCAAATCCTTCTGAAATCTTGATTTCTCATAAAGAAGAAGAACTTTCGGGAACTG
CAATTGCAACAACGCTTGAAGGCATGCGCCCATTGATGATTGAAATCCAAGCACTGGTCAGCACTGCTGTTTATGGAACG
CCACAACGAAGTACTACAGGCTATAACGCCAAGCGACTAAACATGATTTTGGCCGTATTGGAAAAAAGAGCTGGCTTCCG
CTTAGGCGCCAAAGATGTTTTCTTGAACGTTACCGGAGGTATTTCTGTTGATGATCCTGCCATTGACTTGGCTGTCGTGG
CCGCGATTCTTTCTTCTAACGAAGATATTCCCGTTGGAAAAGATTTCTGCTTTGCTGGCGAAGTAGGACTTTCAGGAGAA
ATTCGTCCCGTCAATCGCGTTGACCAAAGAATCCAAGAAGCAGAAAAATTAGGCTTTTCTACCATTTTCGTTTCAAAATA
CAATAAGATTACGCTCAAAAATACGTTTATAAAAATCCGTCTAGTTTCAAAAATCGAAGATGTAGTAAGCGAATTATTTG
GCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(316-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

49.345

100

0.498
  radA Streptococcus pneumoniae Rx1

49.345

100

0.498
  radA Streptococcus pneumoniae D39

49.345

100

0.498
  radA Streptococcus pneumoniae TIGR4

49.345

100

0.498
  radA Streptococcus mitis NCTC 12261

49.127

100

0.496
  radA Streptococcus mitis SK321

49.127

100

0.496
  radA Bacillus subtilis subsp. subtilis str. 168

49.652

94.934

0.471