Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG194_RS00440 Genome accession   NZ_CP108427
Coordinates   86220..87206 (+) Length   328 a.a.
NCBI ID   WP_327398758.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01288     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 81220..92206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG194_RS00405 (OG194_00405) - 81863..82306 (-) 444 WP_327398752.1 STAS domain-containing protein -
  OG194_RS00410 (OG194_00410) - 83092..83982 (-) 891 WP_327398753.1 serine peptidase -
  OG194_RS00415 (OG194_00415) - 83979..84317 (-) 339 WP_327398754.1 hypothetical protein -
  OG194_RS00420 (OG194_00420) - 84323..84418 (+) 96 Protein_83 IS5/IS1182 family transposase -
  OG194_RS00425 (OG194_00425) - 84488..84922 (-) 435 WP_327398755.1 VOC family protein -
  OG194_RS00430 (OG194_00430) - 85056..85781 (-) 726 WP_327398756.1 hypothetical protein -
  OG194_RS00435 (OG194_00435) - 85774..85953 (-) 180 WP_327398757.1 hypothetical protein -
  OG194_RS00440 (OG194_00440) cytR 86220..87206 (+) 987 WP_327398758.1 LacI family DNA-binding transcriptional regulator Regulator
  OG194_RS00445 (OG194_00445) - 87460..88974 (+) 1515 WP_327398759.1 cytosine permease -
  OG194_RS00450 (OG194_00450) - 88971..91733 (+) 2763 WP_327398760.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 34209.85 Da        Isoelectric Point: 5.2279

>NTDB_id=660365 OG194_RS00440 WP_327398758.1 86220..87206(+) (cytR) [Streptomyces sp. NBC_01288]
MVNIRDIAAEAGVSVATASRALTGRGRVSAATVERVRTIADRLQFQPNEIARSLSSGRSHSLGLIVPDITNPFFPELMAG
AESAAKERGQTILLAASPEAESAREDLRLLRARGVDGFIVVGNPFDSAALLREAAGTQPLVVVDRAESITDISTVVTDHV
EGAAIAVRHLLALGHTQIAHISGPSELDVTALRVCGYESEMRKAGLEPTIVEGGFTADCGANAVGRLLDGPEPPTAVTTA
NDIAAIGAMNAVFARGMRVPEDLSVVGYDNIALGALVRPALTTVAQEIGELGSRAVAELDRQMSGDHTVRTVLLGTRLVQ
RGTTKAAS

Nucleotide


Download         Length: 987 bp        

>NTDB_id=660365 OG194_RS00440 WP_327398758.1 86220..87206(+) (cytR) [Streptomyces sp. NBC_01288]
GTGGTGAACATCCGTGACATCGCGGCTGAGGCCGGTGTGTCCGTGGCGACGGCGTCGCGTGCGCTCACCGGCAGGGGCCG
GGTCTCAGCGGCGACGGTGGAGCGGGTGCGTACCATCGCGGATCGGCTGCAGTTCCAGCCGAACGAAATAGCTCGCAGCC
TCTCCTCGGGCCGTTCCCACTCCCTCGGGCTGATCGTTCCGGACATCACGAACCCGTTCTTCCCGGAGCTCATGGCCGGT
GCGGAGAGCGCGGCGAAGGAACGCGGGCAGACCATCCTGCTTGCCGCATCGCCAGAGGCGGAGTCGGCGCGGGAGGATCT
CCGGTTGCTGCGTGCGCGCGGGGTCGACGGCTTCATCGTCGTGGGCAATCCGTTCGACTCCGCCGCGCTGCTGCGGGAGG
CGGCCGGGACGCAACCGCTGGTTGTCGTCGACCGGGCGGAGTCGATCACCGACATCTCGACGGTCGTCACGGACCATGTC
GAAGGCGCCGCAATCGCGGTGCGCCACCTGCTGGCGCTCGGGCACACCCAGATCGCCCACATCAGCGGCCCGTCCGAGCT
CGATGTCACCGCGCTGCGTGTCTGCGGATACGAGAGCGAGATGCGCAAGGCCGGCCTCGAACCGACCATCGTCGAGGGCG
GTTTCACCGCGGACTGCGGAGCCAACGCCGTGGGCCGGCTGCTTGACGGGCCCGAGCCGCCGACGGCCGTCACGACGGCG
AACGACATCGCCGCCATCGGTGCCATGAACGCCGTGTTCGCCCGGGGCATGCGGGTGCCGGAGGACCTCAGCGTCGTCGG
CTACGACAACATCGCGCTGGGGGCGCTCGTCCGTCCCGCCCTGACGACCGTCGCCCAGGAGATCGGGGAGCTGGGTTCGC
GCGCCGTGGCGGAGCTCGACCGGCAGATGTCCGGCGATCACACGGTACGGACGGTCCTGCTCGGCACCCGTCTCGTCCAG
CGCGGCACGACGAAGGCGGCGTCATGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(167-324)

Bacterial regulatory proteins, lacI family (LacI)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

38.485

100

0.387
  cytR Vibrio parahaemolyticus RIMD 2210633

37.952

100

0.384