Detailed information NTG0066034

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H7R00_RS05125
• Genome accession: NZ_AP022105
• Coordinates: 1068231..1069223 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain WP5-S17-ESBL-10
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1063231..1074223

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7R00_RS05095 (WP5S17E10_10040)	ispD	1063292..1064002 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H7R00_RS05100 (WP5S17E10_10050)	ispF	1064002..1064481 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H7R00_RS05105 (WP5S17E10_10060)	truD	1064478..1065527 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
H7R00_RS05110 (WP5S17E10_10070)	surE	1065508..1066269 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H7R00_RS05115 (WP5S17E10_10080)	pcm	1066263..1066889 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H7R00_RS05120 (WP5S17E10_10090)	nlpD	1067074..1068168 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
H7R00_RS05125 (WP5S17E10_10100)	rpoS	1068231..1069223 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H7R00_RS05130 (WP5S17E10_10110)	ygbN	1069317..1070681 (-)	1365	WP_000104459.1	GntP family transporter	-
H7R00_RS05135 (WP5S17E10_10120)	ygbM	1070770..1071546 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
H7R00_RS05140 (WP5S17E10_10130)	ygbL	1071551..1072189 (-)	639	WP_001278994.1	aldolase	-
H7R00_RS05145 (WP5S17E10_10140)	otnK	1072186..1073448 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=66034 H7R00_RS05125 WP_000081550.1 1068231..1069223(+) (rpoS) [Escherichia coli strain WP5-S17-ESBL-10]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=66034 H7R00_RS05125 WP_000081550.1 1068231..1069223(+) (rpoS) [Escherichia coli strain WP5-S17-ESBL-10]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715