Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG534_RS21380 Genome accession   NZ_CP108423
Coordinates   4706465..4707442 (+) Length   325 a.a.
NCBI ID   WP_326589853.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01294     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4701465..4712442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG534_RS21355 (OG534_21395) - 4701831..4702448 (+) 618 Protein_4216 TetR/AcrR family transcriptional regulator -
  OG534_RS21360 (OG534_21400) - 4702511..4704043 (+) 1533 WP_326589850.1 MFS transporter -
  OG534_RS21365 (OG534_21405) - 4704173..4704985 (+) 813 WP_326593740.1 class III extradiol ring-cleavage dioxygenase -
  OG534_RS21370 (OG534_21410) - 4704982..4705620 (-) 639 WP_326589851.1 Uma2 family endonuclease -
  OG534_RS21375 (OG534_21415) - 4705728..4706267 (-) 540 WP_326589852.1 GNAT family N-acetyltransferase -
  OG534_RS21380 (OG534_21420) rpoS 4706465..4707442 (+) 978 WP_326589853.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG534_RS21385 (OG534_21425) - 4707608..4708561 (-) 954 WP_326589854.1 YafY family protein -
  OG534_RS21390 (OG534_21430) - 4708625..4710196 (+) 1572 WP_326589856.1 MFS transporter -
  OG534_RS21395 (OG534_21435) - 4710344..4711105 (+) 762 WP_326589857.1 DeoR/GlpR family DNA-binding transcription regulator -
  OG534_RS21400 (OG534_21440) pfkB 4711102..4712064 (+) 963 WP_326589858.1 1-phosphofructokinase -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 36392.06 Da        Isoelectric Point: 5.0322

>NTDB_id=660334 OG534_RS21380 WP_326589853.1 4706465..4707442(+) (rpoS) [Streptomyces sp. NBC_01294]
MATRAVARRKSTSSARAEGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVYAQQILDGAIERDGDTPAREELE
ALAADGARAKEVFIRSNLRLVVAVARRYPRSGLPLLDLVQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQ
SRTIRLPVHLVEELGRIRRVQREFNRENGRDPEHAEVAAELDTTEKRVGDVLDWARDPVSLNMAVDDNGDTQFGDLLEDT
SAISPEQSVLSLLRSEELEDLLGKLDQRTASIIKMRYGIDDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMARDTG
FDAVA

Nucleotide


Download         Length: 978 bp        

>NTDB_id=660334 OG534_RS21380 WP_326589853.1 4706465..4707442(+) (rpoS) [Streptomyces sp. NBC_01294]
ATGGCAACCCGCGCCGTCGCCCGTCGTAAGTCCACGAGCAGCGCACGCGCTGAGGGCGGGGAGATCGCAGACCGCGACCT
GGTCGGCATGTACCTGGACGAGATCGCGCGCACCCCGCTGCTCGACGCCGCCAAGGAAGTGGAGCTCTCCCAGATCATCG
AGGCGGGCGTGTACGCCCAGCAGATCCTCGACGGCGCGATAGAGCGCGACGGGGACACCCCGGCCCGCGAGGAGCTGGAG
GCGCTGGCCGCCGACGGCGCTCGCGCCAAGGAAGTCTTCATCCGCTCGAACCTCCGCCTCGTCGTGGCCGTCGCCCGCCG
CTACCCGCGCAGCGGCCTGCCGCTCCTCGACCTGGTCCAGGAGGGCAACGCCGGCCTGGTCCGCGCGGTCGAGAAGTTCG
ACTACGCCAAGGGCTTCAAGTTCTCCACGTATGCCACGTGGTGGATCCGCCAGGCGATCACCCGCTCCATTGCGGACCAG
TCCCGCACCATCCGCCTCCCCGTCCACCTGGTCGAGGAACTCGGCCGGATCCGCCGAGTCCAGCGCGAGTTCAACCGCGA
GAACGGCCGCGACCCGGAGCACGCCGAGGTCGCCGCCGAGCTGGACACGACGGAGAAGCGCGTCGGCGACGTCCTGGACT
GGGCGCGCGACCCGGTCAGCCTCAACATGGCGGTCGACGACAACGGCGACACCCAGTTCGGTGACCTCCTGGAGGACACC
TCGGCGATCTCGCCCGAGCAGTCCGTGCTCTCGCTGCTGCGCAGCGAGGAGCTGGAGGACCTGCTCGGCAAGCTCGACCA
GCGCACCGCGTCCATCATCAAGATGCGGTACGGCATCGACGACGGCCGCGAGCGGACGCTGACCGAGGTCGGCAAGCAGC
ACGGCCTGACCCGCGAGCGGATCCGCCAGATCGAGAAGCACGCCCTGCTGGAACTGAAGCGGATGGCGCGCGACACGGGC
TTCGACGCGGTGGCCTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(26-59)

Sigma-70, region 4 (Sigma70_r4)

(261-313)

Sigma-70 region 2 (Sigma70_r2)

(93-162)

Sigma-70 region 3 (Sigma70_r3)

(172-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39

92.308

0.36