Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG534_RS10380 Genome accession   NZ_CP108423
Coordinates   2364529..2365749 (-) Length   406 a.a.
NCBI ID   WP_326587804.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01294     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2359529..2370749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG534_RS10360 (OG534_10395) - 2359886..2360224 (-) 339 WP_326587800.1 P-II family nitrogen regulator -
  OG534_RS10365 (OG534_10400) - 2360221..2361564 (-) 1344 WP_326587801.1 ammonium transporter -
  OG534_RS10370 (OG534_10405) - 2361857..2363347 (-) 1491 WP_326587802.1 hypothetical protein -
  OG534_RS10375 (OG534_10410) - 2363770..2364438 (+) 669 WP_326587803.1 bifunctional DNA primase/polymerase -
  OG534_RS10380 (OG534_10415) pilA 2364529..2365749 (-) 1221 WP_326587804.1 signal recognition particle-docking protein FtsY Machinery gene
  OG534_RS10385 (OG534_10420) - 2365894..2367354 (+) 1461 WP_326587805.1 cytosine permease -
  OG534_RS10390 (OG534_10425) - 2367418..2368404 (+) 987 WP_326587806.1 LLM class flavin-dependent oxidoreductase -
  OG534_RS10395 (OG534_10430) - 2368446..2369879 (-) 1434 WP_326587807.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 42652.86 Da        Isoelectric Point: 4.4045

>NTDB_id=660304 OG534_RS10380 WP_326587804.1 2364529..2365749(-) (pilA) [Streptomyces sp. NBC_01294]
MDILILAVVIALVAVGAISGLVVSSRKKKQLPPTPPSTPTITAPPAEPQVGEDAVETAEEPRRTIEEVVLPEATAPVEAP
VEAPVAEPEAPAAPAIEVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLIADVGVVPTQELVE
RLRERVKVLGTRTPADLRTLLKEELLTLIGTDFDRTVKTESGEDTPGVIMVVGVNGTGKTTTTGKLARVLVADGRSVVLG
AADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKH
GPLDEILLVLDATTGQNGLTQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGPDDLAPFEPEAFV
DALIGD

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=660304 OG534_RS10380 WP_326587804.1 2364529..2365749(-) (pilA) [Streptomyces sp. NBC_01294]
ATGGACATCCTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGCGCGATCAGCGGACTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCGCCCACGCCGCCGAGCACGCCGACCATCACTGCCCCGCCTGCCGAACCGCAGGTGGGGGAGGACG
CCGTAGAGACGGCGGAAGAGCCGCGCCGCACGATCGAGGAGGTCGTGCTCCCGGAGGCGACGGCTCCGGTCGAGGCCCCC
GTCGAGGCCCCCGTCGCGGAGCCGGAGGCCCCGGCCGCGCCCGCGATCGAGGTGCCCGAGCCCACCGCCGGCCGCCTGGT
CCGGCTGCGCGCCCGCCTCGCCCGGTCGCAGAACTCCCTCGGCAAGGGGCTGCTCACGCTGCTCTCCCGAGAGCACCTCG
ACGAGGACACTTGGGAGGAGATCGAGGAGACCCTCCTCATCGCCGACGTCGGTGTCGTGCCCACCCAGGAGCTCGTCGAG
CGGCTCCGCGAGCGGGTCAAGGTGCTCGGCACGCGCACCCCGGCGGACCTGCGCACCCTGCTGAAGGAGGAGCTGCTGAC
CCTCATCGGCACCGATTTCGACCGCACCGTGAAGACGGAGAGCGGCGAGGACACCCCCGGCGTGATCATGGTCGTCGGTG
TCAACGGCACCGGGAAGACCACCACCACCGGCAAGCTCGCCCGCGTGCTCGTCGCCGACGGCCGCAGCGTGGTCCTCGGC
GCGGCCGACACCTTCCGCGCCGCGGCCGCCGACCAGCTCCAGACCTGGGGCGAGCGCGTGGGCGCCCGCACCGTGCGCGG
CCCCGAGGGCGGCGACCCCGCCTCGATCGCCTACGACGCGGTCAAGGAGGGCATCGCCGAGGGCGCCGACGTGGTGCTCA
TCGACACCGCCGGCCGCCTGCACACGAAGACCGGCCTCATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTGGAGAAGCAC
GGACCGCTGGACGAGATCCTGCTGGTCCTGGACGCCACCACCGGGCAGAACGGCCTGACCCAGGCCCGCGTCTTCGCCGA
GGTCGTGGACATCACCGGCATCGTGCTCACCAAGCTCGACGGCACGGCCAAGGGCGGCATCGTCGTCGCCGTCCAGCGCG
AGCTGGGCGTCCCGGTCAAGCTCGTCGGCCTCGGCGAGGGTCCGGACGACCTGGCCCCCTTCGAGCCGGAGGCGTTCGTC
GACGCCCTGATCGGCGACTAG

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(120-185)

SRP54-type protein, GTPase domain (SRP54)

(207-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

43.443

90.148

0.392