Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG534_RS09360 Genome accession   NZ_CP108423
Coordinates   2119531..2120322 (+) Length   263 a.a.
NCBI ID   WP_326587628.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01294     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2114531..2125322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG534_RS09350 (OG534_09385) - 2115511..2118405 (-) 2895 WP_326587626.1 vitamin B12-dependent ribonucleotide reductase -
  OG534_RS09355 (OG534_09390) nrdR 2118549..2119061 (-) 513 WP_326587627.1 transcriptional regulator NrdR -
  OG534_RS09360 (OG534_09395) dinR/lexA 2119531..2120322 (+) 792 WP_326587628.1 transcriptional repressor LexA Regulator
  OG534_RS09365 (OG534_09400) - 2120406..2122376 (-) 1971 WP_326587629.1 ATP-dependent DNA helicase -
  OG534_RS09370 (OG534_09405) - 2122429..2124345 (-) 1917 WP_326587630.1 IucA/IucC family siderophore biosynthesis protein -
  OG534_RS09375 (OG534_09410) - 2124445..2125074 (-) 630 WP_326593534.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28487.27 Da        Isoelectric Point: 7.4239

>NTDB_id=660299 OG534_RS09360 WP_326587628.1 2119531..2120322(+) (dinR/lexA) [Streptomyces sp. NBC_01294]
MTTTADSAAITAQNRSQSRLEPVHAMNDANLNPDAEPVRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPP
SMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNA
AYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 792 bp        

>NTDB_id=660299 OG534_RS09360 WP_326587628.1 2119531..2120322(+) (dinR/lexA) [Streptomyces sp. NBC_01294]
GTGACCACCACCGCAGACAGTGCCGCCATCACTGCCCAGAACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
CGACGCAAACCTGAACCCGGATGCGGAGCCCGTACGCCCCGCACGCTCGCTGCCAGGTCGACCTCCAGGCATCCGCGCCG
ACAGCTCCGGGCTCACGGACCGGCAGCGGAGGGTCATCGAGGTCATTCGCGACTCCGTACAGCGCCGGGGCTACCCGCCG
TCGATGCGGGAGATCGGTCAGGCGGTCGGCCTGTCCAGCACCTCGTCGGTCGCACACCAGCTGATGGCCCTGGAGCGCAA
GGGCTTCCTGCGCCGCGACCCGCACCGCCCCCGGGCCTACGAGGTGCGCGGCTCCGACCAGCCGAGCTCCCAGCCCACGG
ACACCACCGGCAAGCCCGCCGCCTCCTACGTTCCCCTGGTCGGCCGGATCGCGGCCGGCGGCCCGATCCTCGCCGAGGAA
TCGGTCGAGGACGTGTTCCCGCTCCCCCGCCAGCTCGTCGGCGACGGTGAGCTCTTCGTCCTCAAGGTCGTCGGCGACTC
GATGATCGAGGCCGCCATCTGCGACGGCGACTGGGTCACGGTCCGCCGCCAGCCTGTCGCGGAGAACGGCGACATCGTCG
CCGCGATGCTGGACGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTGCTCCCGCACAACGCC
GCCTACCAGCCGATTCCCGGTGACGAGGCGACCATCCTCGGCAAGGTCGTCGCGGTACTGCGTCGCGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(56-119)

Peptidase S24-like (Peptidase_S24)

(145-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.608

0.376