Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MJ904_RS16675 Genome accession   NZ_CP092780
Coordinates   3582018..3583394 (+) Length   458 a.a.
NCBI ID   WP_240734460.1    Uniprot ID   -
Organism   Massilia sp. MB5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3577018..3588394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ904_RS16650 (MJ904_16650) - 3577246..3577977 (+) 732 WP_307732634.1 DUF1853 family protein -
  MJ904_RS16655 (MJ904_16655) lplT 3577979..3579241 (-) 1263 WP_050408484.1 lysophospholipid transporter LplT -
  MJ904_RS16660 (MJ904_16660) - 3579332..3580036 (-) 705 WP_240734459.1 hypothetical protein -
  MJ904_RS16665 (MJ904_16665) - 3580108..3580752 (-) 645 WP_050408482.1 hypothetical protein -
  MJ904_RS16670 (MJ904_16670) alr 3580927..3582015 (+) 1089 WP_050408481.1 alanine racemase -
  MJ904_RS16675 (MJ904_16675) radA 3582018..3583394 (+) 1377 WP_240734460.1 DNA repair protein RadA Machinery gene
  MJ904_RS16680 (MJ904_16680) - 3583531..3583851 (+) 321 WP_050408479.1 PilZ domain-containing protein -
  MJ904_RS16685 (MJ904_16685) fliD 3583976..3585361 (+) 1386 WP_240734461.1 flagellar filament capping protein FliD -
  MJ904_RS16690 (MJ904_16690) - 3585584..3586699 (+) 1116 WP_240734462.1 polyamine ABC transporter substrate-binding protein -
  MJ904_RS16695 (MJ904_16695) - 3587006..3587473 (-) 468 WP_240734463.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48808.32 Da        Isoelectric Point: 7.4621

>NTDB_id=660284 MJ904_RS16675 WP_240734460.1 3582018..3583394(+) (radA) [Massilia sp. MB5]
MAKAKTNYTCSECGGTSSKWTGQCAACQQWNTMVETVIEAPGANRFSQSAHQALAQTAPVLSLKDIEALDVPRFGTGIEE
FDRVLGGGLVAGGVVLIGGDPGIGKSTLLLQALANMAQLKSVLYVSGEESGAQIALRAKRLAVDAHELKLQAEIQLEKIL
NTLHELKPQVAVIDSIQTLYSDALSSAPGSVAQVRECAAQLTRMAKQSGVTIILVGHVTKEGALAGPRVLEHIVDTVLYF
EGDNHSSFRLVRAIKNRFGAVNELGVFAMTDKGLKGVSNPSALFLSQHDNQVPGSCVMVTQEGTRPLLVEIQALVDASHL
PNARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINAVGGVKITEPAADLAVLLAINSSMRNKALPRGFVVFGEVGLA
GEIRPAPRGQERLREAAKLGFSIAMIPKANVPKQPVEGMTIIGVERIDDAFSRLRELQ

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=660284 MJ904_RS16675 WP_240734460.1 3582018..3583394(+) (radA) [Massilia sp. MB5]
ATGGCCAAGGCAAAGACCAACTACACCTGCAGCGAGTGCGGCGGCACCAGCAGCAAATGGACCGGCCAGTGCGCCGCCTG
CCAGCAGTGGAATACGATGGTGGAGACGGTGATCGAGGCGCCCGGCGCCAACCGTTTCTCGCAAAGCGCGCACCAGGCGC
TGGCCCAGACCGCGCCGGTGCTCTCCCTGAAAGATATCGAGGCGCTCGACGTGCCGCGTTTCGGCACCGGCATCGAGGAA
TTCGACCGCGTGCTGGGCGGCGGCCTGGTGGCGGGCGGGGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAATCGAC
GCTGCTGCTGCAGGCGCTGGCCAATATGGCCCAGCTTAAAAGCGTGCTGTATGTCAGTGGCGAGGAGTCGGGCGCCCAGA
TCGCGCTGCGCGCCAAGCGCCTGGCCGTCGATGCGCATGAGCTGAAGCTGCAGGCCGAAATCCAGCTGGAGAAAATCCTC
AATACCCTGCATGAGCTGAAGCCGCAGGTGGCGGTGATCGACTCCATCCAGACCCTGTATTCGGACGCGCTGAGCTCGGC
CCCGGGCTCGGTGGCCCAGGTGCGCGAGTGCGCGGCCCAGCTGACGCGCATGGCCAAGCAGAGCGGCGTGACCATCATCC
TGGTCGGCCACGTGACGAAAGAGGGCGCCCTGGCCGGACCGCGCGTGCTGGAACACATTGTCGACACCGTGCTGTATTTC
GAGGGCGACAACCATTCCAGCTTCCGCCTGGTGCGCGCCATCAAGAACCGCTTCGGCGCGGTCAATGAGCTGGGCGTGTT
CGCCATGACGGACAAGGGCTTGAAAGGCGTCTCCAATCCCTCGGCCCTGTTCCTGTCCCAGCACGACAACCAGGTGCCCG
GTTCCTGCGTGATGGTGACGCAGGAGGGCACCCGTCCGCTGCTGGTGGAAATCCAGGCCCTGGTCGATGCCAGCCATCTG
CCGAATGCGCGCCGCCTCTCGGTGGGCCTGGAGCAGAACCGCCTGGCCATGCTGCTGGCCGTGCTGCACCGCCACGCCGG
CATCGCCGCTTTCGACCAGGACGTCTTCATCAACGCCGTCGGCGGGGTCAAGATCACCGAGCCGGCCGCCGACCTGGCGG
TGTTGCTGGCGATCAACTCTTCGATGCGTAACAAGGCATTGCCGCGCGGTTTCGTGGTCTTTGGCGAGGTCGGGCTGGCG
GGCGAGATCCGGCCCGCGCCGCGCGGCCAGGAGCGGCTGCGCGAGGCGGCCAAGCTGGGCTTCTCGATCGCCATGATTCC
CAAGGCGAATGTGCCGAAACAGCCGGTGGAAGGCATGACCATCATCGGCGTCGAGCGCATCGACGACGCCTTCAGCCGCT
TGCGGGAACTGCAATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.246

99.563

0.48
  radA Streptococcus pneumoniae Rx1

46.855

100

0.472
  radA Streptococcus pneumoniae D39

46.855

100

0.472
  radA Streptococcus mitis SK321

46.855

100

0.472
  radA Streptococcus pneumoniae R6

46.855

100

0.472
  radA Streptococcus pneumoniae TIGR4

46.855

100

0.472
  radA Streptococcus mitis NCTC 12261

46.711

99.563

0.465