Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | BRPE67_RS01165 | Genome accession | NZ_AP014576 |
| Coordinates | 236981..238213 (-) | Length | 410 a.a. |
| NCBI ID | WP_045450292.1 | Uniprot ID | - |
| Organism | Caballeronia cordobensis strain RPE67 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 231981..243213
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BRPE67_RS01145 (BRPE67_ACDS02250) | ybiB | 233653..234645 (-) | 993 | WP_045450288.1 | DNA-binding protein YbiB | - |
| BRPE67_RS01150 (BRPE67_ACDS02260) | - | 234995..235693 (+) | 699 | WP_045450289.1 | fumarylacetoacetate hydrolase family protein | - |
| BRPE67_RS01155 (BRPE67_ACDS02270) | maiA | 235690..236334 (+) | 645 | WP_045450290.1 | maleylacetoacetate isomerase | - |
| BRPE67_RS01160 (BRPE67_ACDS02280) | - | 236331..236948 (+) | 618 | WP_045450291.1 | LysE/ArgO family amino acid transporter | - |
| BRPE67_RS01165 (BRPE67_ACDS02290) | pilA | 236981..238213 (-) | 1233 | WP_045450292.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| BRPE67_RS01170 (BRPE67_ACDS02300) | rsmD | 238448..239074 (+) | 627 | WP_045450293.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| BRPE67_RS01175 (BRPE67_ACDS02310) | coaD | 239175..239681 (+) | 507 | WP_014190321.1 | pantetheine-phosphate adenylyltransferase | - |
| BRPE67_RS01180 (BRPE67_ACDS02320) | - | 239758..240018 (+) | 261 | WP_014190322.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| BRPE67_RS01185 (BRPE67_ACDS02330) | hisC | 240015..241082 (-) | 1068 | WP_045450294.1 | histidinol-phosphate transaminase | - |
| BRPE67_RS01190 (BRPE67_ACDS02340) | pth | 241099..241701 (-) | 603 | WP_014190324.1 | aminoacyl-tRNA hydrolase | - |
| BRPE67_RS01195 (BRPE67_ACDS02350) | - | 241806..242423 (-) | 618 | WP_014190325.1 | 50S ribosomal protein L25/general stress protein Ctc | - |
Sequence
Protein
Download Length: 410 a.a. Molecular weight: 44553.76 Da Isoelectric Point: 4.5949
>NTDB_id=66027 BRPE67_RS01165 WP_045450292.1 236981..238213(-) (pilA) [Caballeronia cordobensis strain RPE67]
MFSFFKRFKKPADEPLDTPQDESVEAAEDEEFSEAELERQALGAEAEPEEAAPEIHEQAAPVAPEPVKPAAPSTAESKEY
WQGRTTSQWLRAPETDQASEEIVPPPMLDAAAKKSWLSRLRHGLSKTSNNLTGIFVSAKIDEDLYEELETALLMSDAGVD
ATEFLLESLREKVRAERLTDATQVKAALRELLIDLLRPLEKSLMLGRAQPLVMMIAGVNGVGKTTSIGKLAKHLQRFNQS
VLLAAGDTFRAAAREQLTVWGERNNVTVIAQESGDAAAVIYDAVGAARARKIDVMMADTAGRLPTQLHLMEELRKVRRVI
AKAMPDAPHEVLLVIDANTGQNALAQVKAFDDALGLTGLVVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFS
AEEFADALLG
MFSFFKRFKKPADEPLDTPQDESVEAAEDEEFSEAELERQALGAEAEPEEAAPEIHEQAAPVAPEPVKPAAPSTAESKEY
WQGRTTSQWLRAPETDQASEEIVPPPMLDAAAKKSWLSRLRHGLSKTSNNLTGIFVSAKIDEDLYEELETALLMSDAGVD
ATEFLLESLREKVRAERLTDATQVKAALRELLIDLLRPLEKSLMLGRAQPLVMMIAGVNGVGKTTSIGKLAKHLQRFNQS
VLLAAGDTFRAAAREQLTVWGERNNVTVIAQESGDAAAVIYDAVGAARARKIDVMMADTAGRLPTQLHLMEELRKVRRVI
AKAMPDAPHEVLLVIDANTGQNALAQVKAFDDALGLTGLVVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFS
AEEFADALLG
Nucleotide
Download Length: 1233 bp
>NTDB_id=66027 BRPE67_RS01165 WP_045450292.1 236981..238213(-) (pilA) [Caballeronia cordobensis strain RPE67]
ATGTTCAGCTTCTTCAAACGATTCAAAAAGCCGGCCGACGAGCCGCTCGATACGCCTCAGGACGAATCCGTCGAGGCCGC
CGAGGACGAAGAATTCTCCGAGGCCGAACTGGAACGGCAGGCGCTCGGCGCTGAGGCTGAGCCGGAAGAAGCCGCGCCGG
AGATTCATGAGCAAGCAGCGCCGGTCGCGCCCGAGCCCGTAAAACCCGCCGCCCCTTCCACGGCGGAATCGAAGGAATAC
TGGCAAGGCCGCACGACGTCGCAATGGTTGCGCGCGCCCGAAACGGATCAGGCGAGCGAAGAAATCGTGCCGCCGCCCAT
GCTCGATGCCGCCGCGAAAAAGTCGTGGCTTTCGCGCCTGCGTCATGGTCTTTCGAAGACGAGCAACAACCTGACCGGCA
TTTTCGTCAGCGCGAAGATCGACGAAGATCTGTACGAAGAACTCGAAACCGCGCTGCTGATGTCAGACGCCGGCGTCGAC
GCCACCGAATTCCTGCTCGAATCGCTGCGCGAGAAGGTGCGCGCCGAGCGCCTGACCGACGCGACGCAGGTGAAAGCGGC
GCTGCGAGAACTGCTGATCGACCTGCTGCGCCCGCTCGAAAAATCGCTGATGCTGGGGCGCGCGCAACCGCTCGTGATGA
TGATCGCGGGCGTCAACGGCGTCGGCAAAACCACGAGCATCGGCAAGCTGGCGAAGCATTTGCAGCGATTCAACCAGTCC
GTGCTGCTCGCCGCAGGCGACACTTTTCGCGCCGCCGCGCGCGAGCAACTCACGGTCTGGGGCGAGCGCAACAACGTCAC
GGTGATCGCGCAGGAAAGCGGCGACGCCGCCGCGGTGATCTACGACGCCGTCGGTGCGGCCCGCGCCCGCAAGATCGACG
TGATGATGGCCGACACCGCCGGCCGCCTGCCGACGCAGTTGCATCTGATGGAAGAGCTGCGCAAGGTGCGCCGCGTGATC
GCGAAGGCGATGCCCGACGCGCCGCACGAAGTGCTGCTCGTCATCGACGCGAACACGGGCCAGAACGCGCTCGCGCAAGT
GAAGGCGTTCGACGATGCGCTGGGCCTGACCGGCCTCGTCGTCACGAAGCTCGACGGCACCGCGAAAGGCGGCATTCTCG
CCGCGATCGCGCGGCAACGGCCCATTCCGGTGTATTTCATCGGCGTGGGCGAAAAGGTCGAGGATCTGCAACCCTTCAGC
GCGGAAGAGTTCGCCGACGCGCTGCTCGGCTAG
ATGTTCAGCTTCTTCAAACGATTCAAAAAGCCGGCCGACGAGCCGCTCGATACGCCTCAGGACGAATCCGTCGAGGCCGC
CGAGGACGAAGAATTCTCCGAGGCCGAACTGGAACGGCAGGCGCTCGGCGCTGAGGCTGAGCCGGAAGAAGCCGCGCCGG
AGATTCATGAGCAAGCAGCGCCGGTCGCGCCCGAGCCCGTAAAACCCGCCGCCCCTTCCACGGCGGAATCGAAGGAATAC
TGGCAAGGCCGCACGACGTCGCAATGGTTGCGCGCGCCCGAAACGGATCAGGCGAGCGAAGAAATCGTGCCGCCGCCCAT
GCTCGATGCCGCCGCGAAAAAGTCGTGGCTTTCGCGCCTGCGTCATGGTCTTTCGAAGACGAGCAACAACCTGACCGGCA
TTTTCGTCAGCGCGAAGATCGACGAAGATCTGTACGAAGAACTCGAAACCGCGCTGCTGATGTCAGACGCCGGCGTCGAC
GCCACCGAATTCCTGCTCGAATCGCTGCGCGAGAAGGTGCGCGCCGAGCGCCTGACCGACGCGACGCAGGTGAAAGCGGC
GCTGCGAGAACTGCTGATCGACCTGCTGCGCCCGCTCGAAAAATCGCTGATGCTGGGGCGCGCGCAACCGCTCGTGATGA
TGATCGCGGGCGTCAACGGCGTCGGCAAAACCACGAGCATCGGCAAGCTGGCGAAGCATTTGCAGCGATTCAACCAGTCC
GTGCTGCTCGCCGCAGGCGACACTTTTCGCGCCGCCGCGCGCGAGCAACTCACGGTCTGGGGCGAGCGCAACAACGTCAC
GGTGATCGCGCAGGAAAGCGGCGACGCCGCCGCGGTGATCTACGACGCCGTCGGTGCGGCCCGCGCCCGCAAGATCGACG
TGATGATGGCCGACACCGCCGGCCGCCTGCCGACGCAGTTGCATCTGATGGAAGAGCTGCGCAAGGTGCGCCGCGTGATC
GCGAAGGCGATGCCCGACGCGCCGCACGAAGTGCTGCTCGTCATCGACGCGAACACGGGCCAGAACGCGCTCGCGCAAGT
GAAGGCGTTCGACGATGCGCTGGGCCTGACCGGCCTCGTCGTCACGAAGCTCGACGGCACCGCGAAAGGCGGCATTCTCG
CCGCGATCGCGCGGCAACGGCCCATTCCGGTGTATTTCATCGGCGTGGGCGAAAAGGTCGAGGATCTGCAACCCTTCAGC
GCGGAAGAGTTCGCCGACGCGCTGCTCGGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
51.408 |
100 |
0.534 |