Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MJ749_RS22250 Genome accession   NZ_CP092779
Coordinates   5043994..5045367 (-) Length   457 a.a.
NCBI ID   WP_013373291.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain ZJ-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5038994..5050367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ749_RS22225 (MJ749_22225) ispF 5039586..5040062 (-) 477 WP_016818638.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MJ749_RS22230 (MJ749_22230) ispD 5040059..5040757 (-) 699 WP_107735230.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MJ749_RS22235 (MJ749_22235) - 5040828..5041913 (-) 1086 WP_151256003.1 PIN/TRAM domain-containing protein -
  MJ749_RS22240 (MJ749_22240) pssA 5042104..5042850 (-) 747 WP_240753333.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  MJ749_RS22245 (MJ749_22245) disA 5042905..5043981 (-) 1077 WP_013373290.1 DNA integrity scanning diadenylate cyclase DisA -
  MJ749_RS22250 (MJ749_22250) radA 5043994..5045367 (-) 1374 WP_013373291.1 DNA repair protein RadA Machinery gene
  MJ749_RS22255 (MJ749_22255) clpC 5045610..5048054 (-) 2445 WP_016818634.1 ATP-dependent protease ATP-binding subunit ClpC -
  MJ749_RS22260 (MJ749_22260) - 5048099..5049163 (-) 1065 WP_025365935.1 protein arginine kinase -
  MJ749_RS22265 (MJ749_22265) - 5049193..5049717 (-) 525 WP_025365936.1 UvrB/UvrC motif-containing protein -
  MJ749_RS22270 (MJ749_22270) - 5049802..5050266 (-) 465 WP_016818631.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49242.94 Da        Isoelectric Point: 6.7620

>NTDB_id=660263 MJ749_RS22250 WP_013373291.1 5043994..5045367(-) (radA) [Paenibacillus polymyxa strain ZJ-9]
MAKVKTKFSCTECGYESPKWYGKCPGCQAWNSMVEETESVVKTQGMGSSLLTHSTKDKPLPIIEVESGKETRILTGIGEL
NRVLGGGVVPGSLVLVGGDPGIGKSTLMLQTSNELALTGLKVLYVSGEESVRQTKLRADRLGALSPSLYVLCETNLETIE
EAVDSLKPEFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGLGIATVLVGHVTKEGAIAGPRLLEHMVDCVLYF
EGERHHTYRLLRAVKNRFGSTNEIGIFEMAESGLREVANPSELFLSERPLGVAGSTVVASMEGTRPVLVELQALIAATHF
PSPRRMGTGIDHHRMGLIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDAPTKPYDVIFGEVGLT
GEVRAVSRAEQRVREAEKLGFKRVIMPEKSLKGWTHPKGIQIIGVGTVADALAAALD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=660263 MJ749_RS22250 WP_013373291.1 5043994..5045367(-) (radA) [Paenibacillus polymyxa strain ZJ-9]
ATGGCTAAAGTGAAAACTAAATTTTCCTGTACAGAATGTGGCTATGAATCGCCTAAATGGTACGGAAAATGTCCTGGATG
CCAGGCATGGAATTCCATGGTCGAAGAAACGGAAAGCGTTGTAAAAACTCAAGGAATGGGATCTTCCCTTCTTACTCATA
GCACAAAAGACAAACCGCTTCCTATTATTGAAGTGGAGAGTGGCAAAGAAACACGAATTTTGACGGGAATTGGTGAATTA
AATCGTGTACTCGGTGGAGGTGTGGTGCCAGGTTCACTTGTTCTGGTGGGTGGTGACCCGGGGATCGGTAAGTCTACGCT
TATGCTGCAAACCTCTAATGAGCTGGCTTTAACTGGTTTAAAGGTACTCTACGTGTCTGGTGAGGAATCCGTCCGCCAAA
CGAAGCTACGTGCAGATCGCCTCGGTGCTTTGTCTCCCAGTCTGTACGTATTATGTGAGACGAATTTGGAGACGATTGAA
GAAGCAGTGGACAGCTTGAAGCCGGAGTTTTTGGTCATCGACTCGATACAGACTGTATATTTGCCTGAGGTGACAAGTGC
GCCTGGTAGTGTAGCTCAGGTGCGCGAGTGTACTTCACGATTTATGCGGATTGCCAAGGGATTAGGTATTGCTACAGTAC
TGGTAGGGCATGTGACCAAAGAAGGCGCTATTGCAGGTCCACGTTTGTTGGAGCATATGGTCGATTGTGTACTTTATTTT
GAAGGAGAGCGCCATCATACGTATCGGCTGTTGCGTGCGGTTAAGAATCGTTTCGGTTCTACGAATGAAATTGGTATTTT
TGAAATGGCCGAAAGTGGTTTGCGTGAGGTGGCGAATCCTTCTGAGCTCTTCCTGTCCGAACGGCCACTGGGGGTGGCTG
GTTCCACAGTCGTTGCCAGTATGGAGGGAACCCGGCCTGTGTTGGTTGAATTGCAAGCACTCATTGCGGCTACGCATTTT
CCATCTCCACGCCGAATGGGTACGGGGATTGACCATCATCGGATGGGATTAATAATAGCCGTATTAGAAAAGCGGATGGG
CATGTTTTTGCAAAACCAGGACGCTTATCTCAATGTTGCTGGAGGCGTAAAGCTGGATGAACCAGCGGTGGATTTAGCCA
TAGCGGTGAGCATTGCTTCCAGCTTTAGGGATGCTCCTACCAAGCCGTACGATGTGATTTTTGGTGAAGTAGGACTGACA
GGCGAGGTGCGGGCTGTATCCCGAGCAGAACAGCGAGTGCGAGAAGCAGAGAAATTAGGTTTCAAACGGGTGATCATGCC
CGAGAAAAGCTTGAAGGGCTGGACACATCCAAAAGGGATACAAATTATAGGAGTTGGAACGGTGGCAGATGCACTGGCAG
CCGCATTAGATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(79-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(350-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

67.249

100

0.674
  radA Streptococcus pneumoniae Rx1

58.85

98.906

0.582
  radA Streptococcus pneumoniae D39

58.85

98.906

0.582
  radA Streptococcus pneumoniae R6

58.85

98.906

0.582
  radA Streptococcus pneumoniae TIGR4

58.85

98.906

0.582
  radA Streptococcus mitis NCTC 12261

58.85

98.906

0.582
  radA Streptococcus mitis SK321

58.628

98.906

0.58