Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MJ749_RS13170 Genome accession   NZ_CP092779
Coordinates   3073131..3073559 (-) Length   142 a.a.
NCBI ID   WP_222821718.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain ZJ-9     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3068131..3078559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ749_RS13125 (MJ749_13125) - 3068311..3068706 (-) 396 WP_016821993.1 LytTR family transcriptional regulator DNA-binding domain-containing protein -
  MJ749_RS13130 (MJ749_13130) - 3068721..3068867 (-) 147 WP_016821994.1 cyclic lactone autoinducer peptide -
  MJ749_RS13135 (MJ749_13135) - 3068845..3069399 (-) 555 WP_016821995.1 accessory gene regulator ArgB-like protein -
  MJ749_RS13140 (MJ749_13140) - 3069377..3070009 (-) 633 WP_029514439.1 hypothetical protein -
  MJ749_RS13145 (MJ749_13145) - 3070134..3070466 (-) 333 WP_222821779.1 YolD-like family protein -
  MJ749_RS13150 (MJ749_13150) - 3070576..3070848 (-) 273 WP_222821780.1 hypothetical protein -
  MJ749_RS13155 (MJ749_13155) - 3071116..3071229 (-) 114 WP_016822651.1 putative holin-like toxin -
  MJ749_RS13160 (MJ749_13160) - 3071339..3071722 (-) 384 WP_222821720.1 hypothetical protein -
  MJ749_RS13165 (MJ749_13165) - 3071737..3072879 (-) 1143 WP_222821719.1 hypothetical protein -
  MJ749_RS13170 (MJ749_13170) nucA/comI 3073131..3073559 (-) 429 WP_222821718.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  MJ749_RS13175 (MJ749_13175) - 3073792..3074661 (+) 870 WP_222821717.1 hypothetical protein -
  MJ749_RS13180 (MJ749_13180) - 3074685..3074918 (-) 234 WP_222821716.1 hypothetical protein -
  MJ749_RS13185 (MJ749_13185) - 3075106..3076518 (-) 1413 WP_222821781.1 helix-turn-helix domain-containing protein -
  MJ749_RS13190 (MJ749_13190) - 3076762..3077214 (+) 453 WP_222821782.1 hypothetical protein -
  MJ749_RS13195 (MJ749_13195) - 3077334..3077834 (-) 501 WP_222822204.1 NucA/NucB deoxyribonuclease domain-containing protein -
  MJ749_RS13200 (MJ749_13200) - 3077946..3078260 (-) 315 WP_151255881.1 hypothetical protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15346.31 Da        Isoelectric Point: 7.2405

>NTDB_id=660252 MJ749_RS13170 WP_222821718.1 3073131..3073559(-) (nucA/comI) [Paenibacillus polymyxa strain ZJ-9]
MIKGIARGLIVFLLAAIFSVQGVYAEPAAISQQSATGYTLEFPSSRYPETGAHIRDAIASGHSAVCTIDRDGAEENRKES
LKGYPTKKGYDRDEWPMAMCAEGGAGADIRYITPSDNRGAGSWVSHQLDKYADGTKVKFIVK

Nucleotide


Download         Length: 429 bp        

>NTDB_id=660252 MJ749_RS13170 WP_222821718.1 3073131..3073559(-) (nucA/comI) [Paenibacillus polymyxa strain ZJ-9]
ATGATAAAAGGAATCGCGAGAGGATTAATTGTATTTTTATTAGCAGCTATTTTTTCTGTGCAAGGTGTTTATGCTGAACC
TGCAGCAATAAGTCAACAATCAGCAACTGGGTATACGCTGGAGTTCCCAAGTTCACGATACCCTGAAACCGGAGCACACA
TTAGAGATGCAATAGCATCCGGACATTCTGCTGTATGTACCATTGATCGAGATGGGGCAGAGGAGAATAGAAAGGAGTCT
CTAAAGGGCTATCCAACTAAAAAAGGATATGACCGCGATGAATGGCCAATGGCCATGTGCGCCGAAGGTGGCGCAGGTGC
TGATATCAGATACATAACCCCTAGTGATAACCGGGGAGCAGGATCATGGGTAAGTCATCAGTTAGATAAGTATGCTGATG
GAACTAAAGTGAAGTTTATTGTTAAATAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.964

78.873

0.528