Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   MK616_RS15230 Genome accession   NZ_CP092778
Coordinates   3092994..3093638 (-) Length   214 a.a.
NCBI ID   WP_014418762.1    Uniprot ID   A0A2Z4EIP2
Organism   Bacillus amyloliquefaciens strain WF2020     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3087994..3098638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK616_RS15195 (MK616_15195) - 3089179..3089610 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  MK616_RS15200 (MK616_15200) - 3089610..3089951 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  MK616_RS15205 (MK616_15205) - 3089944..3091425 (+) 1482 WP_121984664.1 Na+/H+ antiporter subunit D -
  MK616_RS15210 (MK616_15210) - 3091431..3091907 (+) 477 WP_022553708.1 Na+/H+ antiporter subunit E -
  MK616_RS15215 (MK616_15215) - 3091907..3092191 (+) 285 WP_017419420.1 Na(+)/H(+) antiporter subunit F1 -
  MK616_RS15220 (MK616_15220) mnhG 3092175..3092549 (+) 375 WP_095273327.1 monovalent cation/H(+) antiporter subunit G -
  MK616_RS15225 (MK616_15225) - 3092589..3092972 (-) 384 WP_014418761.1 hotdog fold thioesterase -
  MK616_RS15230 (MK616_15230) comA 3092994..3093638 (-) 645 WP_014418762.1 response regulator transcription factor Regulator
  MK616_RS15235 (MK616_15235) comP 3093719..3096010 (-) 2292 WP_100261980.1 histidine kinase Regulator
  MK616_RS15240 (MK616_15240) comX 3096022..3096186 (-) 165 WP_007613432.1 competence pheromone ComX -
  MK616_RS15245 (MK616_15245) - 3096186..3097097 (-) 912 WP_420868259.1 polyprenyl synthetase family protein -
  MK616_RS15250 (MK616_15250) degQ 3097249..3097389 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  MK616_RS15255 (MK616_15255) - 3097855..3098196 (+) 342 WP_014418765.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24302.70 Da        Isoelectric Point: 4.9953

>NTDB_id=660223 MK616_RS15230 WP_014418762.1 3092994..3093638(-) (comA) [Bacillus amyloliquefaciens strain WF2020]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTQRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=660223 MK616_RS15230 WP_014418762.1 3092994..3093638(-) (comA) [Bacillus amyloliquefaciens strain WF2020]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACAGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4EIP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86