Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   MK616_RS13375 Genome accession   NZ_CP092778
Coordinates   2736033..2736785 (-) Length   250 a.a.
NCBI ID   WP_129090980.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain WF2020     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2731033..2741785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK616_RS13350 (MK616_13350) mreC 2731469..2732332 (-) 864 WP_016938781.1 rod shape-determining protein MreC -
  MK616_RS13355 (MK616_13355) mreB 2732363..2733376 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  MK616_RS13360 (MK616_13360) radC 2733468..2734163 (-) 696 WP_007408165.1 RadC family protein -
  MK616_RS13365 (MK616_13365) - 2734195..2734764 (-) 570 WP_012118105.1 Maf family protein -
  MK616_RS13370 (MK616_13370) - 2734905..2735906 (-) 1002 WP_100261926.1 SPOR domain-containing protein -
  MK616_RS13375 (MK616_13375) comC 2736033..2736785 (-) 753 WP_129090980.1 prepilin peptidase Machinery gene
  MK616_RS13380 (MK616_13380) - 2736925..2738217 (-) 1293 WP_129090981.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  MK616_RS13385 (MK616_13385) - 2738276..2740918 (-) 2643 WP_014418550.1 valine--tRNA ligase -
  MK616_RS13390 (MK616_13390) - 2741371..2741562 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27227.94 Da        Isoelectric Point: 9.4293

>NTDB_id=660218 MK616_RS13375 WP_129090980.1 2736033..2736785(-) (comC) [Bacillus amyloliquefaciens strain WF2020]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDTWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLPLGVKLVLIAFFLSVMIGTVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=660218 MK616_RS13375 WP_129090980.1 2736033..2736785(-) (comC) [Bacillus amyloliquefaciens strain WF2020]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAACTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCAGCAGGCATTCATTTCGGTTTCTCGAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACCGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATACATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGCCGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAACCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58