Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG730_RS11745 Genome accession   NZ_CP108414
Coordinates   2617514..2618305 (+) Length   263 a.a.
NCBI ID   WP_327304201.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01298     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2612514..2623305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG730_RS11730 (OG730_11735) - 2612763..2613329 (-) 567 WP_327304199.1 hypothetical protein -
  OG730_RS11735 (OG730_11740) - 2613487..2616381 (-) 2895 WP_327304200.1 vitamin B12-dependent ribonucleotide reductase -
  OG730_RS11740 (OG730_11745) nrdR 2616526..2617035 (-) 510 WP_250748823.1 transcriptional regulator NrdR -
  OG730_RS11745 (OG730_11750) dinR/lexA 2617514..2618305 (+) 792 WP_327304201.1 transcriptional repressor LexA Regulator
  OG730_RS11750 (OG730_11755) - 2618373..2620343 (-) 1971 WP_327304202.1 ATP-dependent DNA helicase -
  OG730_RS11755 (OG730_11760) - 2620396..2622204 (-) 1809 WP_327309223.1 IucA/IucC family siderophore biosynthesis protein -
  OG730_RS11760 (OG730_11765) - 2622412..2623107 (-) 696 WP_327304203.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28536.36 Da        Isoelectric Point: 7.3867

>NTDB_id=660216 OG730_RS11745 WP_327304201.1 2617514..2618305(+) (dinR/lexA) [Streptomyces sp. NBC_01298]
MTTTADSATITAQNRSQSRLEPVHAMNDASLNPEAEPVRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPP
SMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFCLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHNA
AYQPIPGDEATILGKVVAVLRRL

Nucleotide


Download         Length: 792 bp        

>NTDB_id=660216 OG730_RS11745 WP_327304201.1 2617514..2618305(+) (dinR/lexA) [Streptomyces sp. NBC_01298]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGAACCGCTCCCAGAGCCGACTTGAGCCGGTGCATGCCATGAA
TGACGCAAGTCTGAACCCGGAGGCGGAGCCCGTACGCCCCGCACGCTCGCTGCCAGGGCGACCTCCAGGCATCCGCGCCG
ACAGCTCCGGGCTCACGGACCGGCAGCGGAGGGTCATCGAGGTCATTCGCGACTCGGTGCAGCGGCGCGGCTACCCGCCG
TCGATGCGGGAGATCGGCCAGGCGGTCGGCCTGTCCAGCACCTCTTCGGTCGCGCACCAGCTGATGGCCCTGGAGCGCAA
GGGCTTCCTGCGCCGCGACCCCCACCGCCCCCGGGCGTACGAGGTCCGCGGCTCCGACCAGCCCAGCTCGCAGCCCACGG
ACACCACGGGCAAGCCCGCGGCCTCGTACGTCCCCCTGGTCGGCCGGATCGCGGCCGGCGGCCCGATCCTCGCCGAGGAG
TCGGTGGAGGACGTGTTCCCCCTCCCCCGCCAGCTCGTGGGCGACGGAGAACTGTTCTGCCTCAAGGTCGTGGGCGACTC
GATGATCGAGGCCGCGATCTGTGACGGCGACTGGGTGACCGTCCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCGTCG
CCGCCATGCTCGAAGGCGAGGCCACGGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTGCTCCCCCATAACGCC
GCCTACCAGCCGATCCCCGGCGACGAAGCCACCATCCTCGGCAAGGTCGTGGCGGTACTGCGCCGGCTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(56-119)

Peptidase S24-like (Peptidase_S24)

(145-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.667

79.848

0.373