Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MK616_RS10940 Genome accession   NZ_CP092778
Coordinates   2242596..2243204 (+) Length   202 a.a.
NCBI ID   WP_029973656.1    Uniprot ID   A0AAP3YAZ1
Organism   Bacillus amyloliquefaciens strain WF2020     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2237596..2248204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK616_RS10900 (MK616_10900) - 2238616..2239122 (-) 507 WP_012117833.1 PTS sugar transporter subunit IIA -
  MK616_RS10905 (MK616_10905) - 2239261..2239674 (+) 414 WP_017418017.1 Hsp20/alpha crystallin family protein -
  MK616_RS10910 (MK616_10910) - 2239704..2240171 (-) 468 WP_017418018.1 YppG family protein -
  MK616_RS10915 (MK616_10915) - 2240358..2240540 (+) 183 WP_003153532.1 YppF family protein -
  MK616_RS10920 (MK616_10920) - 2240579..2240947 (-) 369 WP_061862317.1 YppE family protein -
  MK616_RS10925 (MK616_10925) - 2240993..2241238 (-) 246 WP_014418233.1 DUF5446 family protein -
  MK616_RS10930 (MK616_10930) sspM 2241444..2241548 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  MK616_RS10935 (MK616_10935) - 2241592..2242554 (-) 963 WP_100261872.1 DUF2515 domain-containing protein -
  MK616_RS10940 (MK616_10940) recU 2242596..2243204 (+) 609 WP_029973656.1 Holliday junction resolvase RecU Machinery gene
  MK616_RS10945 (MK616_10945) - 2243243..2246026 (+) 2784 WP_029973655.1 PBP1A family penicillin-binding protein -
  MK616_RS10950 (MK616_10950) - 2246104..2246595 (-) 492 WP_022553044.1 YpoC family protein -
  MK616_RS10955 (MK616_10955) nth 2246592..2247251 (-) 660 WP_007612187.1 endonuclease III -
  MK616_RS10960 (MK616_10960) dnaD 2247270..2247968 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=660200 MK616_RS10940 WP_029973656.1 2242596..2243204(+) (recU) [Bacillus amyloliquefaciens strain WF2020]
MIRYPNGKTFQPNKTVSSQNSQKRTHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWDRKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=660200 MK616_RS10940 WP_029973656.1 2242596..2243204(+) (recU) [Bacillus amyloliquefaciens strain WF2020]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGACCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGACAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896