Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MK616_RS08885 Genome accession   NZ_CP092778
Coordinates   1818828..1819262 (+) Length   144 a.a.
NCBI ID   WP_021493650.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain WF2020     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1813828..1824262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK616_RS08880 (MK616_08880) - 1817328..1818539 (-) 1212 WP_174532547.1 cytochrome P450 family protein -
  MK616_RS08885 (MK616_08885) nucA/comI 1818828..1819262 (+) 435 WP_021493650.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  MK616_RS08890 (MK616_08890) - 1819322..1820077 (+) 756 WP_022553315.1 YoaK family protein -
  MK616_RS08895 (MK616_08895) - 1820111..1820473 (-) 363 WP_007410383.1 hypothetical protein -
  MK616_RS08900 (MK616_08900) - 1820665..1821993 (-) 1329 WP_160216862.1 S8 family peptidase -
  MK616_RS08905 (MK616_08905) - 1822166..1822399 (+) 234 WP_100262129.1 hypothetical protein -
  MK616_RS08910 (MK616_08910) - 1822655..1823362 (+) 708 WP_014417828.1 poly-gamma-glutamate hydrolase family protein -
  MK616_RS08915 (MK616_08915) - 1823422..1823874 (+) 453 WP_014305039.1 OsmC family protein -
  MK616_RS08920 (MK616_08920) - 1823888..1824241 (-) 354 WP_100261797.1 DMT family transporter -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15480.42 Da        Isoelectric Point: 7.2418

>NTDB_id=660199 MK616_RS08885 WP_021493650.1 1818828..1819262(+) (nucA/comI) [Bacillus amyloliquefaciens strain WF2020]
MNAFMKWAASLLLVISLQVGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=660199 MK616_RS08885 WP_021493650.1 1818828..1819262(+) (nucA/comI) [Bacillus amyloliquefaciens strain WF2020]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGGTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCGGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGATACT
CCGACGGCACGAGAGTACTATTTATCGTTCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486