Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG730_RS01040 Genome accession   NZ_CP108414
Coordinates   215311..216348 (+) Length   345 a.a.
NCBI ID   WP_327302291.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01298     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 210311..221348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG730_RS01025 (OG730_01020) - 212414..213784 (-) 1371 WP_327302289.1 carbohydrate-binding protein -
  OG730_RS01030 (OG730_01025) - 213908..214849 (-) 942 WP_327302290.1 LysR family transcriptional regulator -
  OG730_RS01035 (OG730_01030) - 215003..215164 (+) 162 WP_243337014.1 carbohydrate-binding protein -
  OG730_RS01040 (OG730_01035) cytR 215311..216348 (+) 1038 WP_327302291.1 LacI family DNA-binding transcriptional regulator Regulator
  OG730_RS01045 (OG730_01040) - 216494..219274 (-) 2781 WP_327302292.1 glycosyl hydrolase -
  OG730_RS01050 (OG730_01045) - 219528..220832 (+) 1305 WP_327302293.1 extracellular solute-binding protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 36785.76 Da        Isoelectric Point: 6.0603

>NTDB_id=660199 OG730_RS01040 WP_327302291.1 215311..216348(+) (cytR) [Streptomyces sp. NBC_01298]
MPEPSPGSRPTLEAVAARAGVSRATASRVVNGGDGVRKPLVDKVLRAVDELGYVPNHAARTLVTRRTGAVAVVIAEPEVR
IFSDPFFSQQIRGISKELTAHDTQLVLLLVEGPGDFDRITRYLSGGHVDGALAFSLHTDDPLPAITRRAGIPTVFGGRPG
WTAGPGERTVPYVDADNRGGARVAVQYLRDLGRERIAHIAGPPDQTSATDRLDGYRDVLLDMDPTLIAEGAFTVESGARA
MAELLDRRPDLDAVFVANDLMASGALRVLRDRGIAVPGQVAVVGFDDMDPVAKETDPPLTTVRQDIEGQGRLMARLLLRG
LDRTGNGTGPDSVITPTMLVRRASA

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=660199 OG730_RS01040 WP_327302291.1 215311..216348(+) (cytR) [Streptomyces sp. NBC_01298]
TTGCCCGAGCCGTCCCCCGGGTCCCGCCCCACCCTGGAAGCCGTCGCGGCGCGTGCCGGCGTCTCCCGGGCCACCGCCTC
GCGGGTCGTCAACGGGGGCGACGGGGTCCGCAAACCGCTGGTCGACAAGGTGCTCCGAGCGGTCGACGAGCTCGGCTACG
TCCCCAACCACGCGGCCCGGACGCTGGTGACACGGCGGACGGGCGCGGTGGCCGTCGTCATCGCGGAGCCGGAGGTGCGG
ATCTTCTCGGACCCCTTCTTCTCCCAGCAGATCCGGGGCATCAGCAAGGAGCTGACCGCCCACGACACCCAGCTCGTGCT
GCTGCTGGTGGAGGGGCCGGGCGACTTCGACCGGATCACCCGGTACCTGTCCGGCGGGCACGTGGACGGCGCGCTCGCCT
TCTCGCTGCACACGGACGACCCGCTGCCCGCGATCACCCGGCGAGCGGGGATCCCGACCGTGTTCGGGGGCCGGCCCGGC
TGGACCGCCGGACCCGGCGAACGGACCGTTCCGTACGTCGACGCCGACAACCGGGGTGGGGCCCGGGTGGCCGTGCAGTA
CCTGCGGGACCTGGGGCGCGAGCGCATCGCACACATCGCCGGGCCGCCCGACCAGACCTCGGCGACGGACCGCCTCGACG
GCTACCGGGACGTGCTGCTGGACATGGATCCGACGCTCATCGCCGAGGGCGCCTTCACCGTGGAGAGCGGGGCGCGGGCG
ATGGCGGAGCTGCTCGACCGGCGGCCCGACCTGGACGCGGTGTTCGTCGCGAACGACCTGATGGCGTCGGGGGCGCTACG
GGTCCTGCGGGATCGCGGGATCGCGGTGCCCGGGCAGGTGGCGGTCGTCGGGTTCGACGACATGGATCCGGTGGCCAAGG
AGACCGACCCGCCGCTGACCACCGTCCGGCAGGACATCGAGGGCCAGGGGCGGCTGATGGCACGGCTGCTGCTGCGCGGC
CTCGACCGTACGGGGAACGGCACGGGACCGGACTCGGTGATCACCCCGACCATGCTGGTCCGGCGGGCCTCCGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(185-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.207

100

0.365