Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   MK616_RS07340 Genome accession   NZ_CP092778
Coordinates   1404386..1404982 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain WF2020     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1399386..1409982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK616_RS07310 (MK616_07310) - 1399599..1400054 (+) 456 WP_007409622.1 flavodoxin -
  MK616_RS07315 (MK616_07315) dapD 1400136..1400846 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  MK616_RS07320 (MK616_07320) - 1400917..1402041 (+) 1125 WP_115940829.1 N-acetyldiaminopimelate deacetylase -
  MK616_RS07325 (MK616_07325) - 1402102..1402347 (+) 246 WP_003154596.1 YkuS family protein -
  MK616_RS07330 (MK616_07330) - 1402381..1403187 (-) 807 WP_174532583.1 mechanosensitive ion channel family protein -
  MK616_RS07335 (MK616_07335) - 1403475..1403933 (+) 459 WP_174532582.1 TlpA disulfide reductase family protein -
  MK616_RS07340 (MK616_07340) rok 1404386..1404982 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  MK616_RS07345 (MK616_07345) - 1405003..1405995 (-) 993 WP_014417619.1 hypothetical protein -
  MK616_RS07350 (MK616_07350) - 1406141..1406743 (+) 603 WP_025649507.1 molybdenum cofactor guanylyltransferase -
  MK616_RS07355 (MK616_07355) - 1406795..1407814 (+) 1020 WP_095059974.1 molybdopterin-synthase adenylyltransferase MoeB -
  MK616_RS07360 (MK616_07360) glp 1407832..1409124 (+) 1293 WP_240680208.1 gephyrin-like molybdotransferase Glp -
  MK616_RS07365 (MK616_07365) mobB 1409085..1409606 (+) 522 WP_032863763.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=660193 MK616_RS07340 WP_003154591.1 1404386..1404982(+) (rok) [Bacillus amyloliquefaciens strain WF2020]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=660193 MK616_RS07340 WP_003154591.1 1404386..1404982(+) (rok) [Bacillus amyloliquefaciens strain WF2020]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCGGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCGGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACGTTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843