Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MK616_RS01960 Genome accession   NZ_CP092778
Coordinates   390012..390965 (+) Length   317 a.a.
NCBI ID   WP_015239156.1    Uniprot ID   A0AAP3YGS2
Organism   Bacillus amyloliquefaciens strain WF2020     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 385012..395965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK616_RS01935 (MK616_01935) - 385054..386481 (+) 1428 WP_215522567.1 sensor histidine kinase -
  MK616_RS01940 (MK616_01940) rapC 386640..387788 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  MK616_RS01945 (MK616_01945) phrC 387772..387891 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  MK616_RS01950 (MK616_01950) - 388044..388154 (-) 111 WP_369878517.1 YjcZ family sporulation protein -
  MK616_RS01955 (MK616_01955) - 388234..389598 (-) 1365 WP_045508518.1 aspartate kinase -
  MK616_RS01960 (MK616_01960) ceuB 390012..390965 (+) 954 WP_015239156.1 ABC transporter permease Machinery gene
  MK616_RS01965 (MK616_01965) - 390955..391902 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  MK616_RS01970 (MK616_01970) - 391896..392654 (+) 759 WP_063636991.1 ABC transporter ATP-binding protein -
  MK616_RS01975 (MK616_01975) - 392676..393620 (+) 945 WP_021495116.1 siderophore ABC transporter substrate-binding protein -
  MK616_RS01980 (MK616_01980) - 393662..395086 (-) 1425 WP_017419270.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34945.24 Da        Isoelectric Point: 9.6741

>NTDB_id=660174 MK616_RS01960 WP_015239156.1 390012..390965(+) (ceuB) [Bacillus amyloliquefaciens strain WF2020]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=660174 MK616_RS01960 WP_015239156.1 390012..390965(+) (ceuB) [Bacillus amyloliquefaciens strain WF2020]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCAGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGATCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTCTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTTAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCCCACAC
CGCTCTGCTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGGAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

99.685

0.536