Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SMUNUM_RS09635 Genome accession   NZ_AP014571
Coordinates   1944480..1945193 (+) Length   237 a.a.
NCBI ID   WP_019805181.1    Uniprot ID   -
Organism   Streptococcus mutans LP13     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1939480..1950193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNUM_RS09620 - 1940261..1940599 (-) 339 Protein_1845 lipase -
  SMUNUM_RS09625 (SMNUM_1824) treC 1940685..1942313 (-) 1629 WP_168747881.1 alpha,alpha-phosphotrehalase -
  SMUNUM_RS09630 (SMNUM_1825) treP 1942339..1944306 (-) 1968 WP_019805522.1 PTS system trehalose-specific EIIBC component -
  SMUNUM_RS09635 (SMNUM_1826) treR 1944480..1945193 (+) 714 WP_019805181.1 trehalose operon repressor Regulator
  SMUNUM_RS09640 - 1945320..1945457 (+) 138 WP_012997963.1 hypothetical protein -
  SMUNUM_RS09645 (SMNUM_1827) dexA 1945539..1948091 (-) 2553 WP_080010162.1 dextranase DexA -
  SMUNUM_RS09650 (SMNUM_1828) dtd 1948576..1949022 (-) 447 WP_002266260.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27838.23 Da        Isoelectric Point: 9.8118

>NTDB_id=66016 SMUNUM_RS09635 WP_019805181.1 1944480..1945193(+) (treR) [Streptococcus mutans LP13]
MKKYEIIFKKLEEDILKGYYQMGDYLPPEMELSQIYASSRDTVRKALQLLTKAGFIKTVQGRGSQIIKRERINFPVSQLT
SYQELVKQLQMNVKTNVIAIDKLIVDEKLTKLTGFENKGLVWRITRQRVIDGVASILDTDYLDKALIPHMTREIAERSIY
DYLENQLKLDIAYAQKIITIDQVSQKDKILLDLDSENHVVSVKSKVYLSNQQQFQFTESRHKLEKFRFVDFARRHRD

Nucleotide


Download         Length: 714 bp        

>NTDB_id=66016 SMUNUM_RS09635 WP_019805181.1 1944480..1945193(+) (treR) [Streptococcus mutans LP13]
ATGAAAAAATATGAAATTATTTTTAAAAAACTAGAAGAAGATATTCTCAAAGGATACTATCAAATGGGTGACTATCTTCC
CCCTGAAATGGAACTTAGCCAGATCTATGCCAGCAGCCGAGATACTGTTAGAAAGGCTTTACAGCTCTTGACTAAGGCAG
GTTTTATTAAAACAGTACAGGGAAGAGGATCCCAAATTATCAAGCGTGAGCGCATTAACTTTCCTGTTTCTCAACTAACC
AGCTATCAAGAATTGGTTAAACAATTGCAGATGAATGTCAAGACAAATGTTATTGCTATTGATAAACTGATTGTTGATGA
GAAACTCACCAAACTAACCGGTTTTGAAAATAAAGGTCTTGTCTGGCGCATCACAAGACAGCGCGTAATAGACGGCGTTG
CTTCCATTTTAGATACGGATTATTTGGATAAAGCATTGATTCCTCATATGACCAGAGAAATCGCTGAACGTTCTATCTAT
GATTATCTTGAAAATCAACTTAAGCTGGACATTGCCTATGCTCAAAAGATTATTACCATAGATCAAGTATCGCAAAAAGA
TAAAATTTTGCTTGATTTGGATTCTGAAAATCATGTCGTTTCGGTTAAATCTAAAGTTTATCTCAGTAATCAGCAGCAAT
TTCAATTCACTGAAAGCCGGCACAAACTGGAAAAGTTCCGTTTTGTTGACTTTGCCAGACGGCATCGTGATTAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(90-227)

Bacterial regulatory proteins, gntR family (GntR)

(4-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

98.734

100

0.987

Multiple sequence alignment