Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OG622_RS24880 Genome accession   NZ_CP108394
Coordinates   5672862..5673986 (-) Length   374 a.a.
NCBI ID   WP_371578844.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01314     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5667862..5678986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG622_RS24870 (OG622_24945) gyrB 5669869..5671932 (-) 2064 WP_371578842.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  OG622_RS24875 (OG622_24950) - 5672329..5672865 (-) 537 WP_371578843.1 DUF721 domain-containing protein -
  OG622_RS24880 (OG622_24955) recF 5672862..5673986 (-) 1125 WP_371578844.1 DNA replication/repair protein RecF Machinery gene
  OG622_RS24885 (OG622_24960) gnd 5674089..5674964 (-) 876 WP_371578845.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  OG622_RS24890 (OG622_24965) dnaN 5675171..5676301 (-) 1131 WP_371584204.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40882.57 Da        Isoelectric Point: 7.2046

>NTDB_id=660157 OG622_RS24880 WP_371578844.1 5672862..5673986(-) (recF) [Streptomyces sp. NBC_01314]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGADRAVIRAQVRQGERQ
QLVELELNPGKANRARVNRSSQVKPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARAPRMAGVRSDYERVLKQ
RNTLLKSAALARRHGGRTMDLSTLDVWDQHLARVGAELLARRLDLVAAIQPLADKAYEQLAPGGGPVSLEYKPSSPGLVG
HAREELYEQLMAALGESRKQEIERGVTLVGPHRDDVNLKLGQLPAKGYASHGESWSYALALRLASYDLLRAEGNEPVLIL
DDVFAELDARRRERLAELVAPGEQVLVTAAVDDDVPDVLAGARYFVSDGAVERV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=660157 OG622_RS24880 WP_371578844.1 5672862..5673986(-) (recF) [Streptomyces sp. NBC_01314]
ATGCACGTCACGCATCTGTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTCCCGCTCGACCCGGGCGTCACCGC
GTTCGTGGGCCCCAACGGGCAGGGCAAGACGAACCTGGTCGAGGCTGTCGGCTATCTCGCGACCCTCGGCAGCCACCGGG
TGTCCTCGGACGCGCCCCTGGTTCGGATGGGCGCCGACCGCGCGGTGATCCGGGCGCAGGTGCGGCAGGGCGAGCGACAG
CAGCTCGTCGAGCTGGAGCTGAACCCCGGCAAGGCGAACCGGGCGCGCGTCAACAGGTCGTCGCAGGTCAAACCCCGTGA
CGTGCTCGGCATCGTGCGGACGGTGCTGTTCGCGCCGGAGGACCTCGCACTGGTCAAGGGCGACCCCGGTGAACGGCGGC
GCTTCCTCGACGAGCTGATCACGGCACGGGCCCCACGCATGGCGGGCGTGCGCTCCGACTACGAGCGGGTGCTCAAGCAG
CGCAACACACTCCTCAAGTCGGCCGCACTGGCCCGTCGGCACGGCGGTCGCACCATGGATCTGTCCACGCTCGACGTGTG
GGACCAGCACCTCGCGCGCGTGGGCGCCGAGTTGCTCGCCCGGCGCCTGGACCTGGTCGCCGCGATCCAGCCGCTCGCCG
ACAAGGCGTACGAGCAGCTCGCACCTGGGGGCGGACCAGTGAGTTTGGAATACAAGCCTTCCTCGCCCGGCCTCGTCGGC
CACGCGCGCGAGGAGCTGTACGAGCAGCTGATGGCCGCTCTCGGCGAGAGCCGCAAGCAGGAGATCGAGAGGGGCGTCAC
CCTCGTAGGGCCCCATCGAGATGATGTGAATCTCAAACTCGGTCAGCTGCCTGCCAAGGGATACGCCTCCCACGGAGAGT
CCTGGTCGTACGCCCTGGCCCTGCGGCTCGCCTCGTACGATCTGCTGCGGGCCGAGGGGAACGAGCCGGTGCTGATCCTC
GACGACGTCTTCGCCGAGTTGGACGCCCGCCGACGGGAGCGCCTGGCGGAGCTGGTCGCGCCGGGCGAGCAGGTCCTGGT
GACCGCCGCGGTCGACGACGACGTACCGGACGTACTGGCAGGGGCGCGGTACTTCGTGTCCGACGGGGCGGTGGAGCGCG
TATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

35.433

100

0.361