Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG622_RS14420 Genome accession   NZ_CP108394
Coordinates   3267140..3267916 (+) Length   258 a.a.
NCBI ID   WP_020114122.1    Uniprot ID   A0A5P8KDE7
Organism   Streptomyces sp. NBC_01314     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3262140..3272916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG622_RS14405 (OG622_14450) - 3262362..3262898 (+) 537 WP_371576391.1 TerD family protein -
  OG622_RS14410 (OG622_14455) - 3262987..3265881 (-) 2895 WP_371576392.1 vitamin B12-dependent ribonucleotide reductase -
  OG622_RS14415 (OG622_14460) nrdR 3266039..3266602 (-) 564 WP_371576394.1 transcriptional regulator NrdR -
  OG622_RS14420 (OG622_14465) dinR/lexA 3267140..3267916 (+) 777 WP_020114122.1 transcriptional repressor LexA Regulator
  OG622_RS14425 (OG622_14470) - 3268110..3270119 (-) 2010 WP_371576396.1 ATP-dependent DNA helicase -
  OG622_RS14430 (OG622_14475) - 3270336..3271076 (-) 741 WP_371576398.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 27936.61 Da        Isoelectric Point: 7.0666

>NTDB_id=660128 OG622_RS14420 WP_020114122.1 3267140..3267916(+) (dinR/lexA) [Streptomyces sp. NBC_01314]
MTTTADSATITAQDRSQSRLEPVHAMNEATNHEGPKRALPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQSSAQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDV
FPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYEPI
PGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 777 bp        

>NTDB_id=660128 OG622_RS14420 WP_020114122.1 3267140..3267916(+) (dinR/lexA) [Streptomyces sp. NBC_01314]
GTGACCACCACCGCTGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCACGAACCATGAAGGGCCCAAGCGAGCCTTGCCCGGCCGACCTCCAGGCATCAGGGCGGACAGCTCCGGGCTCA
CCGATCGGCAGCGCCGGGTCATCGAGGTGATCAGGGACTCGGTGCAGCGGCGGGGATACCCGCCGTCGATGCGGGAGATC
GGCCAGGCGGTCGGCCTGTCCAGCACGTCTTCCGTGGCACACCAGCTGATGGCACTGGAGCGCAAGGGATTCTTGCGCCG
AGACCCGCACCGCCCTCGGGCGTACGAGGTCCGCGGCTCCGACCAGTCCTCGGCACAACCGACGGACACGGCCGGCAAGC
CGGCCGCCTCGTACGTGCCACTCGTCGGCAGGATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAGTCCGTCGAGGACGTG
TTCCCGCTCCCCCGCCAACTGGTGGGCGACGGCGAACTCTTCGTCCTCAAGGTCGTGGGTGACTCCATGATCGAGGCCGC
CATCTGCGACGGCGACTGGGTGACGGTCCGCCGTCAGCCCGTAGCCGAGAACGGCGACATCGTGGCCGCCATGCTGGACG
GCGAGGCCACGGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTGCTCCCGCACAACGCCGCCTACGAGCCCATT
CCGGGTGACGACGCGACCATCCTCGGCAAGGTGGTGGCCGTCCTGCGCCGCGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(140-252)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P8KDE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.19

81.395

0.376