Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG349_RS16265 Genome accession   NZ_CP108393
Coordinates   3828237..3828836 (-) Length   199 a.a.
NCBI ID   WP_161311300.1    Uniprot ID   A0A6G9GZZ0
Organism   Streptomyces sp. NBC_01317     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3823237..3833836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - recR 3828237..3828836 (-) 600 - - Machinery gene

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21789.18 Da        Isoelectric Point: 5.1616

>NTDB_id=660082 OG349_RS16265 WP_161311300.1 3828237..3828836(-) (recR) [Streptomyces sp. NBC_01317]
MYEGVVQGLIDELGRLPGVGPKSAQRIAFHILQAEQTDVRRLAHALLEVKDKVRFCAVCGNVAQEELCGICRDVRRDVTV
ICVVEEPKDVVAVERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLTRLADGTVTELILATDPNLEGEATATYLARMIK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=660082 OG349_RS16265 WP_161311300.1 3828237..3828836(-) (recR) [Streptomyces sp. NBC_01317]
TTGTACGAAGGCGTGGTTCAGGGCCTCATCGACGAACTGGGCAGGCTGCCCGGCGTCGGCCCCAAGAGTGCGCAACGGAT
CGCCTTCCACATCCTCCAGGCCGAGCAGACCGACGTCCGCCGCCTCGCCCACGCCCTTCTTGAGGTCAAGGACAAGGTCA
GGTTCTGCGCGGTGTGCGGCAATGTCGCGCAGGAGGAGCTGTGCGGGATCTGCCGTGACGTCCGCCGGGACGTGACGGTG
ATCTGTGTGGTGGAGGAGCCCAAGGACGTCGTCGCGGTGGAGCGTACGCGCGAGTTCCGCGGGAAATATCACGTCCTCGG
CGGGGCGATCAGCCCGATCGAGGGCGTGGGCCCGGACGATCTGCGGATCCGCGAGCTGCTCACCCGCCTCGCCGACGGCA
CGGTCACGGAGCTGATCCTGGCGACGGACCCGAATCTGGAAGGCGAGGCGACGGCGACGTACCTCGCCCGCATGATCAAA
CCGATGGGCCTGCGGGTCACACGCCTGGCCAGCGGTCTCCCCGTGGGGGGCGACCTCGAATATGCCGACGAGGTCACGCT
CGGGCGTGCCTTCGAGGGGAGACGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G9GZZ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462