Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MKF36_RS10460 Genome accession   NZ_CP092750
Coordinates   2126407..2127015 (+) Length   202 a.a.
NCBI ID   WP_042635727.1    Uniprot ID   -
Organism   Bacillus velezensis strain KS04AU     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2121407..2132015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKF36_RS10420 (MKF36_10420) - 2122460..2122966 (-) 507 WP_007409495.1 PTS glucose transporter subunit IIA -
  MKF36_RS10425 (MKF36_10425) - 2123105..2123518 (+) 414 WP_017418017.1 hypothetical protein -
  MKF36_RS10430 (MKF36_10430) - 2123548..2123982 (-) 435 WP_007409493.1 YppG family protein -
  MKF36_RS10435 (MKF36_10435) - 2124169..2124351 (+) 183 WP_003153532.1 YppF family protein -
  MKF36_RS10440 (MKF36_10440) - 2124390..2124758 (-) 369 WP_042635291.1 YppE family protein -
  MKF36_RS10445 (MKF36_10445) - 2124804..2125049 (-) 246 WP_007409491.1 DUF5446 family protein -
  MKF36_RS10450 (MKF36_10450) sspM 2125255..2125359 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  MKF36_RS10455 (MKF36_10455) - 2125403..2126365 (-) 963 WP_032870042.1 DUF2515 domain-containing protein -
  MKF36_RS10460 (MKF36_10460) recU 2126407..2127015 (+) 609 WP_042635727.1 Holliday junction resolvase RecU Machinery gene
  MKF36_RS10465 (MKF36_10465) - 2127054..2129837 (+) 2784 WP_042635292.1 PBP1A family penicillin-binding protein -
  MKF36_RS10470 (MKF36_10470) - 2129915..2130406 (-) 492 WP_015240085.1 YpoC family protein -
  MKF36_RS10475 (MKF36_10475) nth 2130403..2131062 (-) 660 WP_007612187.1 endonuclease III -
  MKF36_RS10480 (MKF36_10480) dnaD 2131081..2131779 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.74 Da        Isoelectric Point: 9.5849

>NTDB_id=660023 MKF36_RS10460 WP_042635727.1 2126407..2127015(+) (recU) [Bacillus velezensis strain KS04AU]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWDRKE
NNGRKSIRRDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=660023 MKF36_RS10460 WP_042635727.1 2126407..2127015(+) (recU) [Bacillus velezensis strain KS04AU]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACCGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGACAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAGAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891