Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG243_RS14250 Genome accession   NZ_CP108392
Coordinates   3103246..3104040 (+) Length   264 a.a.
NCBI ID   WP_326626675.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01318     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3098246..3109040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG243_RS14235 (OG243_14270) - 3098432..3098968 (+) 537 WP_326606112.1 TerD family protein -
  OG243_RS14240 (OG243_14275) - 3099126..3102029 (-) 2904 WP_326626673.1 vitamin B12-dependent ribonucleotide reductase -
  OG243_RS14245 (OG243_14280) nrdR 3102189..3102701 (-) 513 WP_326606110.1 transcriptional regulator NrdR -
  OG243_RS14250 (OG243_14285) dinR/lexA 3103246..3104040 (+) 795 WP_326626675.1 transcriptional repressor LexA Regulator
  OG243_RS14255 (OG243_14290) - 3104179..3106149 (-) 1971 WP_326626677.1 ATP-dependent DNA helicase -
  OG243_RS14260 (OG243_14295) - 3106200..3108059 (-) 1860 WP_326626679.1 IucA/IucC family siderophore biosynthesis protein -
  OG243_RS14265 (OG243_14300) - 3108120..3108998 (-) 879 WP_326626681.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28737.48 Da        Isoelectric Point: 6.9859

>NTDB_id=659985 OG243_RS14250 WP_326626675.1 3103246..3104040(+) (dinR/lexA) [Streptomyces sp. NBC_01318]
MTTTADSATITAQDRSQSRLEPVHAMNDSVRNTEEPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=659985 OG243_RS14250 WP_326626675.1 3103246..3104040(+) (dinR/lexA) [Streptomyces sp. NBC_01318]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCAGGAACACGGAGGAGCCGGAGCCGGCGCGCCCAGCGCGCTCGCTCCCCGGCCGACCTCCAGGAATCCGAG
CGGACAGCTCGGGGCTCACGGACCGGCAGCGGCGAGTGATCGAGGTCATCCGCGACTCGGTGCAGCGACGGGGATACCCA
CCCTCGATGCGGGAGATCGGTCAGGCGGTGGGGCTGTCCAGCACGTCCTCCGTCGCCCATCAACTGATGGCTCTGGAACG
CAAGGGCTTCCTCCGCCGCGACCCTCATCGCCCCCGGGCGTACGAGGTCCGCGGTTCGGACCAGCCCAGCACGCAGCCGA
CCGACACGACCGGCAAGCCCGCCGCTTCGTACGTACCGCTGGTCGGCCGGATCGCAGCCGGCGGACCGATCCTCGCCGAG
GAATCGGTCGAGGACGTGTTTCCGCTCCCCCGCCAGCTGGTCGGGGACGGCGAGCTGTTCGTCCTGAAGGTCGTCGGTGA
CTCGATGATCGAGGCGGCGATCTGTGACGGCGACTGGGTCACCGTGCGCCGTCAGCCCGTCGCGGAGAACGGCGACATCG
TGGCCGCCATGCTCGACGGCGAGGCGACGGTCAAGCGCTTCAAGCGGGAGGACGGCCATGTATGGCTGCTCCCGCACAAC
TCCGCGTACCAGCCGATCCCTGGCGACGAGGCGACCATCCTCGGCAAGGTCGTGGCGGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371