Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG243_RS13645 Genome accession   NZ_CP108392
Coordinates   2958564..2958791 (+) Length   75 a.a.
NCBI ID   WP_327239681.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01318     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2953564..2963791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG243_RS13610 (OG243_13645) - 2953702..2954355 (+) 654 WP_327239674.1 YdcF family protein -
  OG243_RS13615 (OG243_13650) - 2954737..2955933 (+) 1197 WP_327239675.1 DUF262 domain-containing protein -
  OG243_RS13620 (OG243_13655) - 2956022..2956663 (+) 642 WP_327239676.1 hypothetical protein -
  OG243_RS13625 (OG243_13660) - 2956757..2957059 (-) 303 WP_327239677.1 hypothetical protein -
  OG243_RS13630 (OG243_13665) - 2957059..2957202 (-) 144 WP_327239678.1 hypothetical protein -
  OG243_RS13635 (OG243_13670) - 2957180..2957365 (-) 186 WP_327239679.1 hypothetical protein -
  OG243_RS13640 (OG243_13675) - 2957426..2958196 (-) 771 WP_327239680.1 hypothetical protein -
  OG243_RS13645 (OG243_13680) dinR/lexA 2958564..2958791 (+) 228 WP_327239681.1 MarR family transcriptional regulator Regulator
  OG243_RS13650 (OG243_13685) - 2959097..2960455 (+) 1359 WP_327239682.1 hypothetical protein -

Sequence

Protein


Download         Length: 75 a.a.        Molecular weight: 8495.71 Da        Isoelectric Point: 11.1702

>NTDB_id=659981 OG243_RS13645 WP_327239681.1 2958564..2958791(+) (dinR/lexA) [Streptomyces sp. NBC_01318]
MCTHKYVHNLTDRQRRILAAIRDHIAETGEAPTVREIGAAVGLSSSSSVLYQLRRLEQAGVLARERYRSRSVRMS

Nucleotide


Download         Length: 228 bp        

>NTDB_id=659981 OG243_RS13645 WP_327239681.1 2958564..2958791(+) (dinR/lexA) [Streptomyces sp. NBC_01318]
ATGTGTACCCATAAGTATGTGCACAACCTTACGGACCGCCAGCGCCGTATCCTCGCTGCCATCCGCGACCACATCGCAGA
GACAGGCGAGGCCCCCACCGTGCGCGAAATCGGCGCGGCAGTAGGACTGAGCAGCAGCAGCTCCGTTCTCTACCAGCTTC
GTCGACTTGAGCAGGCCGGGGTCCTTGCTCGAGAGCGCTACCGTTCAAGGTCGGTCCGTATGTCCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(9-70)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

43.077

86.667

0.373